5 items (Morus notabilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L484_025040	PORR domain-containing protein. (433 aa)
	L484_010520	Chloroplastic group IIA intron splicing facilitator CRS1. (449 aa)
	L484_003245	LEA_2 domain-containing protein. (210 aa)
	L484_023770	Uncharacterized protein. (232 aa)
	L484_011848	Uncharacterized protein. (267 aa)

Your Current Organism:

Morus notabilis

NCBI taxonomy Id: 981085
Other names: M. notabilis, Morus notabilis C.K.Schneid.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L484_003245	L484_023770	W9R9V3	W9RCV2	LEA_2 domain-containing protein.	Uncharacterized protein.	0.490
L484_003245	L484_025040	W9R9V3	W9QKQ5	LEA_2 domain-containing protein.	PORR domain-containing protein.	0.459
L484_010520	L484_011848	W9QZY8	W9S1V6	Chloroplastic group IIA intron splicing facilitator CRS1.	Uncharacterized protein.	0.498
L484_010520	L484_023770	W9QZY8	W9RCV2	Chloroplastic group IIA intron splicing facilitator CRS1.	Uncharacterized protein.	0.428
L484_010520	L484_025040	W9QZY8	W9QKQ5	Chloroplastic group IIA intron splicing facilitator CRS1.	PORR domain-containing protein.	0.460
L484_011848	L484_010520	W9S1V6	W9QZY8	Uncharacterized protein.	Chloroplastic group IIA intron splicing facilitator CRS1.	0.498
L484_011848	L484_025040	W9S1V6	W9QKQ5	Uncharacterized protein.	PORR domain-containing protein.	0.404
L484_023770	L484_003245	W9RCV2	W9R9V3	Uncharacterized protein.	LEA_2 domain-containing protein.	0.490
L484_023770	L484_010520	W9RCV2	W9QZY8	Uncharacterized protein.	Chloroplastic group IIA intron splicing facilitator CRS1.	0.428
L484_023770	L484_025040	W9RCV2	W9QKQ5	Uncharacterized protein.	PORR domain-containing protein.	0.520
L484_025040	L484_003245	W9QKQ5	W9R9V3	PORR domain-containing protein.	LEA_2 domain-containing protein.	0.459
L484_025040	L484_010520	W9QKQ5	W9QZY8	PORR domain-containing protein.	Chloroplastic group IIA intron splicing facilitator CRS1.	0.460
L484_025040	L484_011848	W9QKQ5	W9S1V6	PORR domain-containing protein.	Uncharacterized protein.	0.404
L484_025040	L484_023770	W9QKQ5	W9RCV2	PORR domain-containing protein.	Uncharacterized protein.	0.520