STRINGSTRING
SYNE3 SYNE3 THY1 THY1 YIPF1 YIPF1 ACAN ACAN EFEMP2 EFEMP2 FSTL1 FSTL1 COL6A1 COL6A1 BANK1 BANK1 TIMP2 TIMP2 ARRDC2 ARRDC2 CD28 CD28 SPARC SPARC ACTG1 ACTG1 ACTBL2 ACTBL2 CCN2 CCN2 ACTB ACTB GAPDH GAPDH LOC110257903 LOC110257903 BGN BGN AOAH AOAH RIPK2 RIPK2 MKX MKX ACTL8 ACTL8 FN1 FN1 CENPL CENPL COL1A2 COL1A2 FMOD FMOD MMP13 MMP13 MMP12 MMP12 MMP1 MMP1 TNMD TNMD MEDAG MEDAG FCRLB FCRLB TENT5A TENT5A HOXC9 HOXC9 PAPLN PAPLN LUM LUM DCN DCN IGF1 IGF1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SYNE3Spectrin repeat containing nuclear envelope family member 3. (975 aa)
THY1Thy-1 cell surface antigen. (165 aa)
YIPF1Protein YIPF. (320 aa)
ACANAggrecan core protein 2; This proteoglycan is a major component of extracellular matrix of cartilagenous tissues. A major function of this protein is to resist compression in cartilage. It binds avidly to hyaluronic acid via an N-terminal globular region. May play a regulatory role in the matrix assembly of the cartilage. (2434 aa)
EFEMP2EGF containing fibulin extracellular matrix protein 2. (498 aa)
FSTL1Follistatin like 1. (307 aa)
COL6A1Collagen type VI alpha 1 chain. (1028 aa)
BANK1B cell scaffold protein with ankyrin repeats 1. (780 aa)
TIMP2Uncharacterized protein. (257 aa)
ARRDC2Arrestin domain containing 2. (498 aa)
CD28IGv domain-containing protein. (222 aa)
SPARCSPARC; Appears to regulate cell growth through interactions with the extracellular matrix and cytokines. Binds calcium and copper, several types of collagen, albumin, thrombospondin, PDGF and cell membranes. There are two calcium binding sites; an acidic domain that binds 5 to 8 Ca(2+) with a low affinity and an EF-hand loop that binds a Ca(2+) ion with a high affinity (By similarity); Belongs to the SPARC family. (331 aa)
ACTG1Actin gamma 1. (381 aa)
ACTBL2Actin beta like 2. (385 aa)
CCN2CCN family member 2; Major connective tissue mitoattractant secreted by vascular endothelial cells. Promotes proliferation and differentiation of chondrocytes (By similarity). Mediates heparin- and divalent cation- dependent cell adhesion in many cell types including fibroblasts, myofibroblasts, endothelial and epithelial cells (By similarity). Enhances fibroblast growth factor-induced DNA synthesis (By similarity). (354 aa)
ACTBActin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. (375 aa)
GAPDHGlyceraldehyde-3-phosphate dehydrogenase; Has both glyceraldehyde-3-phosphate dehydrogenase and nitrosylase activities, thereby playing a role in glycolysis and nuclear functions, respectively. Glyceraldehyde-3-phosphate dehydrogenase is a key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Modulates the organization and assembly of the cytoskeleton. Facilitates the CHP1-dependent microtubule and membrane associations through its ability to stimulate the binding of CHP1 to microtubu [...] (398 aa)
LOC110257903Fibronectin type-III domain-containing protein. (388 aa)
BGNBiglycan; May be involved in collagen fiber assembly. (338 aa)
AOAHAcyloxyacyl hydrolase. (575 aa)
RIPK2Receptor-interacting serine/threonine-protein kinase 2; Serine/threonine/tyrosine kinase that plays an essential role in modulation of innate and adaptive immune responses. Upon stimulation by bacterial peptidoglycans, NOD1 and NOD2 are activated, oligomerize and recruit RIPK2 through CARD-CARD domains. (533 aa)
MKXMohawk homeobox. (351 aa)
ACTL8Actin like 8; Belongs to the actin family. (365 aa)
FN1Fibronectin 1. (2462 aa)
CENPLCentromere protein L. (370 aa)
COL1A2Fibrillar collagen NC1 domain-containing protein. (1135 aa)
FMODFibromodulin; Affects the rate of fibrils formation. May have a primary role in collagen fibrillogenesis (By similarity). (376 aa)
MMP13Matrix metallopeptidase 13. (470 aa)
MMP12Macrophage metalloelastase preproprotein. (476 aa)
MMP1Stromelysin-1 preproprotein. (477 aa)
TNMDTenomodulin. (317 aa)
MEDAGMesenteric estrogen dependent adipogenesis. (303 aa)
FCRLBFc receptor like B. (425 aa)
TENT5ATerminal nucleotidyltransferase 5A. (434 aa)
HOXC9Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (260 aa)
PAPLNPapilin, proteoglycan like sulfated glycoprotein. (961 aa)
LUMLumican. (341 aa)
DCNDecorin; May affect the rate of fibrils formation. (359 aa)
IGF1Insulin-like growth factor I; The insulin-like growth factors, isolated from plasma, are structurally and functionally related to insulin but have a much higher growth-promoting activity. May be a physiological regulator of [1-14C]- 2-deoxy-D-glucose (2DG) transport and glycogen synthesis in osteoblasts. Stimulates glucose transport in bone-derived osteoblastic (PyMS) cells and is effective at much lower concentrations than insulin, not only regarding glycogen and DNA synthesis but also with regard to enhancing glucose uptake. May play a role in synapse maturation. Ca(2+)-dependent exo [...] (230 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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