STRINGSTRING
VPS18 VPS18 VPS11 VPS11 TGFBRAP1 TGFBRAP1 VPS33A VPS33A VPS39 VPS39 VPS8 VPS8 VIPAS39 VIPAS39 VPS41 VPS41 VPS16 VPS16 VPS33B VPS33B
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VPS18VPS18 core subunit of CORVET and HOPS complexes. (973 aa)
VPS11Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family. (941 aa)
TGFBRAP1Transforming growth factor beta receptor associated protein 1. (873 aa)
VPS33AVacuolar protein sorting 33A homolog; Belongs to the STXBP/unc-18/SEC1 family. (596 aa)
VPS39VPS39 subunit of HOPS complex. (898 aa)
VPS8Vacuolar protein sorting-associated protein 8 homolog isoform a. (1428 aa)
VIPAS39VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog. (539 aa)
VPS41Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family. (953 aa)
VPS16Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family. (842 aa)
VPS33BUncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (650 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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