STRINGSTRING
SNU13 SNU13 PWP1 PWP1 PMEL PMEL NOP2 NOP2 UTP20 UTP20 IMP3 IMP3 NOP9 NOP9 DDX24 DDX24 NOB1 NOB1 GRWD1 GRWD1 F1SUY3_PIG F1SUY3_PIG UTP11 UTP11 MPHOSPH10 MPHOSPH10 RCL1 RCL1 PUM3 PUM3 DCAF13 DCAF13 RRS1 RRS1 WDR3 WDR3 DNTTIP2 DNTTIP2 NOP56 NOP56 NCOA6 NCOA6 CEBPZ CEBPZ NOP14 NOP14 SDAD1 SDAD1 NOC4L NOC4L RBM19 RBM19 PES1 PES1 HEATR1 HEATR1 PDCD11 PDCD11 NOL6 NOL6 GNL3 GNL3 UTP14A UTP14A NAT10 NAT10 KRI1 KRI1 PPAN PPAN UTP15 UTP15 UTP25 UTP25 NIFK NIFK IMP4 IMP4 WDR75 WDR75 WDR12 WDR12 ZNF622 ZNF622 FBLL1 FBLL1 NOL11 NOL11 FTSJ3 FTSJ3 UTP18 UTP18 AATF AATF RRP1B RRP1B FBL FBL EBNA1BP2 EBNA1BP2 DDX18 DDX18 RSL24D1 RSL24D1 NOP58 NOP58 UTP3 UTP3 BYSL BYSL WDR43 WDR43 NOC2L NOC2L DDX27 DDX27 DDX52 DDX52 GTPBP4 GTPBP4 NOC3L NOC3L DDX49 DDX49 RPF1 RPF1 BMS1 BMS1 EMG1 EMG1 UTP23 UTP23 RRP9 RRP9 NOP53 NOP53 GNL3L GNL3L RETREG1 RETREG1 A0A286ZLE8_PIG A0A286ZLE8_PIG MRTO4 MRTO4 NOL10 NOL10 WDR36 WDR36 PA2G4 PA2G4 DDX47 DDX47 DIMT1 DIMT1 NLE1 NLE1 A0A287ACW2_PIG A0A287ACW2_PIG UTP6 UTP6 ZNF593 ZNF593 A0A287AJR4_PIG A0A287AJR4_PIG GNL2 GNL2 DDX55 DDX55 RRP1 RRP1 FCF1 FCF1 GCC1 GCC1 WDR74 WDR74 NGDN NGDN MAK16 MAK16 A0A287B0N5_PIG A0A287B0N5_PIG SURF6 SURF6 ABT1 ABT1 PNO1 PNO1 RIOK2 RIOK2 TSR1 TSR1 TBL3 TBL3 DDX31 DDX31 KRR1 KRR1 LTV1 LTV1 DDX54 DDX54 WDR46 WDR46 LSG1 LSG1 NSA2 NSA2 RSL1D1 RSL1D1 A0A5G2QJF6_PIG A0A5G2QJF6_PIG RRP12 RRP12 UTP4 UTP4 RRP7A RRP7A PWP2 PWP2 RBM28 RBM28 NSUN6 NSUN6 NIP7 NIP7 BUD23 BUD23 RPF2 RPF2 DHX37 DHX37 DDX56 DDX56 EIF6 EIF6 MCC MCC RPL7L1 RPL7L1 NMD3 NMD3 RTCA RTCA NOL12 NOL12 RRP15 RRP15
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (132 aa)
PWP1PWP1 homolog, endonuclein. (499 aa)
PMELMelanocyte protein PMEL isoform 3 preproprotein. (637 aa)
NOP2SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (822 aa)
UTP20UTP20 small subunit processome component. (2781 aa)
IMP3S4 RNA-binding domain-containing protein. (184 aa)
NOP9NOP9 nucleolar protein. (637 aa)
DDX24DEAD-box helicase 24. (819 aa)
NOB1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (413 aa)
GRWD1Glutamate rich WD repeat containing 1. (445 aa)
F1SUY3_PIGUncharacterized protein. (308 aa)
UTP11U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (253 aa)
MPHOSPH10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (680 aa)
RCL1RNA terminal phosphate cyclase like 1. (450 aa)
PUM3Pumilio RNA binding family member 3. (648 aa)
DCAF13DDB1 and CUL4 associated factor 13. (444 aa)
RRS1Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (365 aa)
WDR3WD repeat domain 3. (943 aa)
DNTTIP2Fcf2 domain-containing protein. (771 aa)
NOP56NOP56 ribonucleoprotein. (596 aa)
NCOA6Nuclear receptor coactivator 6. (2061 aa)
CEBPZCCAAT enhancer binding protein zeta. (1049 aa)
NOP14NOP14 nucleolar protein. (852 aa)
SDAD1Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (687 aa)
NOC4LNucleolar complex associated 4 homolog. (543 aa)
RBM19RNA binding motif protein 19. (940 aa)
PES1Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family. (597 aa)
HEATR1HEAT repeat containing 1. (2141 aa)
PDCD11Programmed cell death 11. (1875 aa)
NOL6Nucleolar protein 6. (1145 aa)
GNL3G protein nucleolar 3. (551 aa)
UTP14AUncharacterized protein. (773 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1026 aa)
KRI1KRI1 homolog. (708 aa)
PPANSuppressor of SWI4 1 homolog isoform 1. (469 aa)
UTP15Uncharacterized protein. (518 aa)
UTP25UTP25 small subunit processor component. (760 aa)
NIFKNucleolar protein interacting with the FHA domain of MKI67. (294 aa)
IMP4U3 small nucleolar ribonucleoprotein IMP4 isoform a. (291 aa)
WDR75WD repeat-containing protein 75 isoform 1. (831 aa)
WDR12Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (423 aa)
ZNF622Zinc finger protein 622. (473 aa)
FBLL1rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1. (332 aa)
NOL11Nucleolar protein 11. (880 aa)
FTSJ3pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (836 aa)
UTP18U3 small nucleolar RNA-associated protein 18 homolog. (572 aa)
AATFApoptosis antagonizing transcription factor. (569 aa)
RRP1BRibosomal RNA processing 1B. (739 aa)
FBLFibrillarin. (321 aa)
EBNA1BP2EBNA1 binding protein 2. (400 aa)
DDX18RNA helicase. (786 aa)
RSL24D1Ribosomal L24 domain containing 1. (163 aa)
NOP58NOP58 ribonucleoprotein. (546 aa)
UTP3Sas10 domain-containing protein. (474 aa)
BYSLUncharacterized protein. (435 aa)
WDR43WD repeat-containing protein 43. (681 aa)
NOC2LNOC2 like nucleolar associated transcriptional repressor. (713 aa)
DDX27DEAD-box helicase 27; Belongs to the DEAD box helicase family. (763 aa)
DDX52Putative ATP-dependent RNA helicase DDX52 isoform 1. (599 aa)
GTPBP4Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (634 aa)
NOC3LNucleolar complex protein 3 homolog. (799 aa)
DDX49DEAD-box helicase 49; Belongs to the DEAD box helicase family. (476 aa)
RPF1Ribosome production factor 1 homolog. (349 aa)
BMS1BMS1 ribosome biogenesis factor. (1284 aa)
EMG1Ribosomal RNA small subunit methyltransferase NEP1 isoform 1. (244 aa)
UTP23UTP23 small subunit processome component. (251 aa)
RRP9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (475 aa)
NOP53Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (470 aa)
GNL3LG protein nucleolar 3 like. (687 aa)
RETREG1Reticulophagy regulator 1. (565 aa)
A0A286ZLE8_PIGRibosomal_L7Ae domain-containing protein. (74 aa)
MRTO4Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (272 aa)
NOL10Nucleolar protein 10 isoform 1. (688 aa)
WDR36WD repeat domain 36. (895 aa)
PA2G4Proliferation-associated 2G4. (372 aa)
DDX47Putative ATP-dependent RNA helicase DDX47; Belongs to the DEAD box helicase family. (493 aa)
DIMT1rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (313 aa)
NLE1Notchless homolog 1. (487 aa)
A0A287ACW2_PIGPeptidase_M24 domain-containing protein. (291 aa)
UTP6UTP6 small subunit processome component. (598 aa)
ZNF593C2H2-type domain-containing protein. (84 aa)
A0A287AJR4_PIGRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
GNL2Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (730 aa)
DDX55RNA helicase. (600 aa)
RRP1Ribosomal RNA processing protein 1 homolog A. (447 aa)
FCF1FCF1 rRNA-processing protein. (198 aa)
GCC1GRIP and coiled-coil domain-containing protein 1. (775 aa)
WDR74Uncharacterized protein. (388 aa)
NGDNUncharacterized protein. (328 aa)
MAK16Protein MAK16 homolog; Belongs to the MAK16 family. (297 aa)
A0A287B0N5_PIGRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (123 aa)
SURF6Surfeit 6. (321 aa)
ABT1Activator of basal transcription 1. (272 aa)
PNO1RNA-binding protein PNO1 isoform 1. (252 aa)
RIOK2RIO domain-containing protein. (190 aa)
TSR1TSR1 ribosome maturation factor. (763 aa)
TBL3Transducin beta like 3. (889 aa)
DDX31RNA helicase. (816 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (375 aa)
LTV1LTV1 ribosome biogenesis factor. (475 aa)
DDX54ATP-dependent RNA helicase DDX54; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (879 aa)
WDR46WD repeat-containing protein 46 isoform 1. (656 aa)
LSG1Large 60S subunit nuclear export GTPase 1. (651 aa)
NSA2Ribosome biogenesis protein NSA2 homolog isoform 1. (260 aa)
RSL1D1Ribosomal L1 domain-containing protein 1. (493 aa)
A0A5G2QJF6_PIGSAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (105 aa)
RRP12Ribosomal RNA processing 12 homolog. (1256 aa)
UTP4U3 small nucleolar RNA-associated protein 4 homolog isoform 1. (686 aa)
RRP7ARibosomal RNA processing 7 homolog A. (412 aa)
PWP2Uncharacterized protein. (1096 aa)
RBM28RNA binding motif protein 28. (758 aa)
NSUN6NOP2/Sun RNA methyltransferase 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (598 aa)
NIP760S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (192 aa)
BUD23BUD23 rRNA methyltransferase and ribosome maturation factor. (372 aa)
RPF2Ribosome production factor 2 homolog. (306 aa)
DHX37DEAH-box helicase 37. (1186 aa)
DDX56Uncharacterized protein. (554 aa)
EIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Behaves as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (RACK1)- dependent protein kinase C activity. In tissues responsive to insulin, contro [...] (246 aa)
MCCMCC regulator of WNT signaling pathway. (982 aa)
RPL7L160S ribosomal protein L7-like 1; Belongs to the universal ribosomal protein uL30 family. (340 aa)
NMD360S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (525 aa)
RTCAUncharacterized protein. (379 aa)
NOL12Uncharacterized protein. (309 aa)
RRP15Ribosomal RNA processing 15 homolog. (303 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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