(7 nodes) Mixed, incl. Mpp10 complex, and CURI complex network (Sus scrofa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	IMP3	S4 RNA-binding domain-containing protein. (184 aa)
	UTP11	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (253 aa)
	IMP4	U3 small nucleolar ribonucleoprotein IMP4 isoform a. (291 aa)
	EMG1	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1. (244 aa)
	FCF1	FCF1 rRNA-processing protein. (198 aa)
	KRR1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (375 aa)
	RRP7A	Ribosomal RNA processing 7 homolog A. (412 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EMG1	FCF1	ENSSSCP00000026081	ENSSSCP00000045943	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	FCF1 rRNA-processing protein.	0.995
EMG1	IMP3	ENSSSCP00000026081	ENSSSCP00000002051	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	S4 RNA-binding domain-containing protein.	0.982
EMG1	IMP4	ENSSSCP00000026081	ENSSSCP00000016674	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	U3 small nucleolar ribonucleoprotein IMP4 isoform a.	0.992
EMG1	KRR1	ENSSSCP00000026081	ENSSSCP00000054044	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.995
EMG1	RRP7A	ENSSSCP00000026081	ENSSSCP00000063970	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	Ribosomal RNA processing 7 homolog A.	0.983
EMG1	UTP11	ENSSSCP00000026081	ENSSSCP00000003950	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.992
FCF1	EMG1	ENSSSCP00000045943	ENSSSCP00000026081	FCF1 rRNA-processing protein.	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	0.995
FCF1	IMP3	ENSSSCP00000045943	ENSSSCP00000002051	FCF1 rRNA-processing protein.	S4 RNA-binding domain-containing protein.	0.984
FCF1	IMP4	ENSSSCP00000045943	ENSSSCP00000016674	FCF1 rRNA-processing protein.	U3 small nucleolar ribonucleoprotein IMP4 isoform a.	0.979
FCF1	KRR1	ENSSSCP00000045943	ENSSSCP00000054044	FCF1 rRNA-processing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.996
FCF1	RRP7A	ENSSSCP00000045943	ENSSSCP00000063970	FCF1 rRNA-processing protein.	Ribosomal RNA processing 7 homolog A.	0.987
FCF1	UTP11	ENSSSCP00000045943	ENSSSCP00000003950	FCF1 rRNA-processing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.996
IMP3	EMG1	ENSSSCP00000002051	ENSSSCP00000026081	S4 RNA-binding domain-containing protein.	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	0.982
IMP3	FCF1	ENSSSCP00000002051	ENSSSCP00000045943	S4 RNA-binding domain-containing protein.	FCF1 rRNA-processing protein.	0.984
IMP3	IMP4	ENSSSCP00000002051	ENSSSCP00000016674	S4 RNA-binding domain-containing protein.	U3 small nucleolar ribonucleoprotein IMP4 isoform a.	0.999
IMP3	KRR1	ENSSSCP00000002051	ENSSSCP00000054044	S4 RNA-binding domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.991
IMP3	RRP7A	ENSSSCP00000002051	ENSSSCP00000063970	S4 RNA-binding domain-containing protein.	Ribosomal RNA processing 7 homolog A.	0.991
IMP3	UTP11	ENSSSCP00000002051	ENSSSCP00000003950	S4 RNA-binding domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.986
IMP4	EMG1	ENSSSCP00000016674	ENSSSCP00000026081	U3 small nucleolar ribonucleoprotein IMP4 isoform a.	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	0.992
IMP4	FCF1	ENSSSCP00000016674	ENSSSCP00000045943	U3 small nucleolar ribonucleoprotein IMP4 isoform a.	FCF1 rRNA-processing protein.	0.979