STRINGSTRING
PWP1 PWP1 NOP2 NOP2 DDX24 DDX24 GRWD1 GRWD1 PUM3 PUM3 RRS1 RRS1 CEBPZ CEBPZ SDAD1 SDAD1 RBM19 RBM19 PES1 PES1 GNL3 GNL3 PPAN PPAN NIFK NIFK WDR12 WDR12 FTSJ3 FTSJ3 RRP1B RRP1B EBNA1BP2 EBNA1BP2 DDX18 DDX18 RSL24D1 RSL24D1 NOC2L NOC2L DDX27 DDX27 GTPBP4 GTPBP4 NOC3L NOC3L RPF1 RPF1 NOP53 NOP53 GNL3L GNL3L MRTO4 MRTO4 NLE1 NLE1 A0A287ACW2_PIG A0A287ACW2_PIG GNL2 GNL2 DDX55 DDX55 RRP1 RRP1 WDR74 WDR74 MAK16 MAK16 DDX31 DDX31 DDX54 DDX54 NSA2 NSA2 RSL1D1 RSL1D1 A0A5G2QJF6_PIG A0A5G2QJF6_PIG RRP12 RRP12 RBM28 RBM28 NSUN6 NSUN6 NIP7 NIP7 RPF2 RPF2 DDX56 DDX56 NOL12 NOL12 RRP15 RRP15
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PWP1PWP1 homolog, endonuclein. (499 aa)
NOP2SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (822 aa)
DDX24DEAD-box helicase 24. (819 aa)
GRWD1Glutamate rich WD repeat containing 1. (445 aa)
PUM3Pumilio RNA binding family member 3. (648 aa)
RRS1Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (365 aa)
CEBPZCCAAT enhancer binding protein zeta. (1049 aa)
SDAD1Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (687 aa)
RBM19RNA binding motif protein 19. (940 aa)
PES1Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family. (597 aa)
GNL3G protein nucleolar 3. (551 aa)
PPANSuppressor of SWI4 1 homolog isoform 1. (469 aa)
NIFKNucleolar protein interacting with the FHA domain of MKI67. (294 aa)
WDR12Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (423 aa)
FTSJ3pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (836 aa)
RRP1BRibosomal RNA processing 1B. (739 aa)
EBNA1BP2EBNA1 binding protein 2. (400 aa)
DDX18RNA helicase. (786 aa)
RSL24D1Ribosomal L24 domain containing 1. (163 aa)
NOC2LNOC2 like nucleolar associated transcriptional repressor. (713 aa)
DDX27DEAD-box helicase 27; Belongs to the DEAD box helicase family. (763 aa)
GTPBP4Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (634 aa)
NOC3LNucleolar complex protein 3 homolog. (799 aa)
RPF1Ribosome production factor 1 homolog. (349 aa)
NOP53Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (470 aa)
GNL3LG protein nucleolar 3 like. (687 aa)
MRTO4Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (272 aa)
NLE1Notchless homolog 1. (487 aa)
A0A287ACW2_PIGPeptidase_M24 domain-containing protein. (291 aa)
GNL2Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (730 aa)
DDX55RNA helicase. (600 aa)
RRP1Ribosomal RNA processing protein 1 homolog A. (447 aa)
WDR74Uncharacterized protein. (388 aa)
MAK16Protein MAK16 homolog; Belongs to the MAK16 family. (297 aa)
DDX31RNA helicase. (816 aa)
DDX54ATP-dependent RNA helicase DDX54; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (879 aa)
NSA2Ribosome biogenesis protein NSA2 homolog isoform 1. (260 aa)
RSL1D1Ribosomal L1 domain-containing protein 1. (493 aa)
A0A5G2QJF6_PIGSAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (105 aa)
RRP12Ribosomal RNA processing 12 homolog. (1256 aa)
RBM28RNA binding motif protein 28. (758 aa)
NSUN6NOP2/Sun RNA methyltransferase 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (598 aa)
NIP760S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (192 aa)
RPF2Ribosome production factor 2 homolog. (306 aa)
DDX56Uncharacterized protein. (554 aa)
NOL12Uncharacterized protein. (309 aa)
RRP15Ribosomal RNA processing 15 homolog. (303 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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