(17 nodes) Mixed, incl. Mitochondrial ribosome assembly, and Regulation of mitochondrial translation network (Sus scrofa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPUSD3	Mitochondrial mRNA pseudouridine synthase RPUSD3 isoform 1. (352 aa)
	RPUSD4	RNA pseudouridylate synthase domain-containing protein 4. (376 aa)
	GTPBP10	GTP binding protein 10. (379 aa)
	FASTKD2	FAST kinase domain-containing protein 2, mitochondrial. (689 aa)
	MRM3	Mitochondrial rRNA methyltransferase 3. (422 aa)
	METTL17	Methyltransferase-like protein 17, mitochondrial isoform 2. (461 aa)
	DDX28	DEAD-box helicase 28. (540 aa)
	NOA1	Nitric oxide associated 1. (719 aa)
	MTG1	Mitochondrial ribosome associated GTPase 1. (443 aa)
	TFB1M	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (340 aa)
	MTG2	Mitochondrial ribosome associated GTPase 2. (432 aa)
	MRM2	FtsJ domain-containing protein. (246 aa)
	MALSU1	Mitochondrial assembly of ribosomal large subunit 1. (234 aa)
	TRUB2	Mitochondrial mRNA pseudouridine synthase TRUB2 isoform 1. (349 aa)
	NSUN4	NOP2/Sun RNA methyltransferase 4; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (382 aa)
	MTERF3	Transcription termination factor 3, mitochondrial isoform 1. (445 aa)
	GTPBP8	GTP binding protein 8 (putative). (325 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX28	FASTKD2	ENSSSCP00000021251	ENSSSCP00000017094	DEAD-box helicase 28.	FAST kinase domain-containing protein 2, mitochondrial.	0.817
DDX28	GTPBP10	ENSSSCP00000021251	ENSSSCP00000016231	DEAD-box helicase 28.	GTP binding protein 10.	0.897
DDX28	GTPBP8	ENSSSCP00000021251	ENSSSCP00000061159	DEAD-box helicase 28.	GTP binding protein 8 (putative).	0.718
DDX28	MALSU1	ENSSSCP00000021251	ENSSSCP00000039714	DEAD-box helicase 28.	Mitochondrial assembly of ribosomal large subunit 1.	0.856
DDX28	MRM2	ENSSSCP00000021251	ENSSSCP00000038552	DEAD-box helicase 28.	FtsJ domain-containing protein.	0.751
DDX28	MRM3	ENSSSCP00000021251	ENSSSCP00000018865	DEAD-box helicase 28.	Mitochondrial rRNA methyltransferase 3.	0.920
DDX28	MTERF3	ENSSSCP00000021251	ENSSSCP00000057605	DEAD-box helicase 28.	Transcription termination factor 3, mitochondrial isoform 1.	0.847
DDX28	MTG1	ENSSSCP00000021251	ENSSSCP00000026561	DEAD-box helicase 28.	Mitochondrial ribosome associated GTPase 1.	0.617
DDX28	MTG2	ENSSSCP00000021251	ENSSSCP00000037790	DEAD-box helicase 28.	Mitochondrial ribosome associated GTPase 2.	0.601
DDX28	NOA1	ENSSSCP00000021251	ENSSSCP00000026361	DEAD-box helicase 28.	Nitric oxide associated 1.	0.618
DDX28	NSUN4	ENSSSCP00000021251	ENSSSCP00000052388	DEAD-box helicase 28.	NOP2/Sun RNA methyltransferase 4; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.752
DDX28	RPUSD3	ENSSSCP00000021251	ENSSSCP00000012313	DEAD-box helicase 28.	Mitochondrial mRNA pseudouridine synthase RPUSD3 isoform 1.	0.746
DDX28	RPUSD4	ENSSSCP00000021251	ENSSSCP00000016154	DEAD-box helicase 28.	RNA pseudouridylate synthase domain-containing protein 4.	0.769
DDX28	TFB1M	ENSSSCP00000021251	ENSSSCP00000028186	DEAD-box helicase 28.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.474
DDX28	TRUB2	ENSSSCP00000021251	ENSSSCP00000050883	DEAD-box helicase 28.	Mitochondrial mRNA pseudouridine synthase TRUB2 isoform 1.	0.743
FASTKD2	DDX28	ENSSSCP00000017094	ENSSSCP00000021251	FAST kinase domain-containing protein 2, mitochondrial.	DEAD-box helicase 28.	0.817
FASTKD2	GTPBP10	ENSSSCP00000017094	ENSSSCP00000016231	FAST kinase domain-containing protein 2, mitochondrial.	GTP binding protein 10.	0.653
FASTKD2	MALSU1	ENSSSCP00000017094	ENSSSCP00000039714	FAST kinase domain-containing protein 2, mitochondrial.	Mitochondrial assembly of ribosomal large subunit 1.	0.506
FASTKD2	MRM2	ENSSSCP00000017094	ENSSSCP00000038552	FAST kinase domain-containing protein 2, mitochondrial.	FtsJ domain-containing protein.	0.453
FASTKD2	MRM3	ENSSSCP00000017094	ENSSSCP00000018865	FAST kinase domain-containing protein 2, mitochondrial.	Mitochondrial rRNA methyltransferase 3.	0.525