(5 nodes) Mixed, incl. Regulation of skeletal muscle hypertrophy, and Akirin network (Sus scrofa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKIRIN1	Uncharacterized protein. (226 aa)
	TMEM239	Transmembrane protein 239. (152 aa)
	PRSS57	Serine protease 57; Belongs to the peptidase S1 family. (279 aa)
	MYMK	Myomaker, myoblast fusion factor. (221 aa)
	PPP1R27	Protein phosphatase 1 regulatory subunit 27. (154 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKIRIN1	MYMK	ENSSSCP00000003957	ENSSSCP00000027833	Uncharacterized protein.	Myomaker, myoblast fusion factor.	0.609
AKIRIN1	PPP1R27	ENSSSCP00000003957	ENSSSCP00000031381	Uncharacterized protein.	Protein phosphatase 1 regulatory subunit 27.	0.527
AKIRIN1	PRSS57	ENSSSCP00000003957	ENSSSCP00000024771	Uncharacterized protein.	Serine protease 57; Belongs to the peptidase S1 family.	0.471
AKIRIN1	TMEM239	ENSSSCP00000003957	ENSSSCP00000007631	Uncharacterized protein.	Transmembrane protein 239.	0.533
MYMK	AKIRIN1	ENSSSCP00000027833	ENSSSCP00000003957	Myomaker, myoblast fusion factor.	Uncharacterized protein.	0.609
PPP1R27	AKIRIN1	ENSSSCP00000031381	ENSSSCP00000003957	Protein phosphatase 1 regulatory subunit 27.	Uncharacterized protein.	0.527
PPP1R27	PRSS57	ENSSSCP00000031381	ENSSSCP00000024771	Protein phosphatase 1 regulatory subunit 27.	Serine protease 57; Belongs to the peptidase S1 family.	0.572
PRSS57	AKIRIN1	ENSSSCP00000024771	ENSSSCP00000003957	Serine protease 57; Belongs to the peptidase S1 family.	Uncharacterized protein.	0.471
PRSS57	PPP1R27	ENSSSCP00000024771	ENSSSCP00000031381	Serine protease 57; Belongs to the peptidase S1 family.	Protein phosphatase 1 regulatory subunit 27.	0.572
TMEM239	AKIRIN1	ENSSSCP00000007631	ENSSSCP00000003957	Transmembrane protein 239.	Uncharacterized protein.	0.533