21 items (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PRKDC	Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (4136 aa)
	RPS19	40S ribosomal protein S19; Required for pre-rRNA processing and maturation of 40S ribosomal subunits; Belongs to the eukaryotic ribosomal protein eS19 family. (196 aa)
	A0A286ZPT4_PIG	Uncharacterized protein. (71 aa)
	A0A5G2QQ40_PIG	40S ribosomal protein S27. (181 aa)
	CXHXorf66	Uncharacterized protein. (356 aa)
	RPSA	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteri [...] (295 aa)
	RPS27	40S ribosomal protein S27. (84 aa)
	ABT1	Activator of basal transcription 1. (272 aa)
	A0A287AQP3_PIG	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (147 aa)
	RPS5	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (240 aa)
	RPS15	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (145 aa)
	RRP7A	Ribosomal RNA processing 7 homolog A. (412 aa)
	CCDC105	Coiled-coil domain containing 105. (495 aa)
	RPS28	40S ribosomal protein S28; Belongs to the eukaryotic ribosomal protein eS28 family. (69 aa)
	MRPS11	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (196 aa)
	MRPS7	28S ribosomal protein S7, mitochondrial. (242 aa)
	ERAL1	Era like 12S mitochondrial rRNA chaperone 1. (437 aa)
	RPS27L	40S ribosomal protein S27. (84 aa)
	LOC100623742	Uncharacterized protein. (145 aa)
	PWP2	Uncharacterized protein. (1096 aa)
	XRCC5	X-ray repair cross complementing 5. (1011 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A286ZPT4_PIG	A0A287AQP3_PIG	ENSSSCP00000033610	ENSSSCP00000046277	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.899
A0A286ZPT4_PIG	A0A5G2QQ40_PIG	ENSSSCP00000033610	ENSSSCP00000060403	Uncharacterized protein.	40S ribosomal protein S27.	0.823
A0A286ZPT4_PIG	CCDC105	ENSSSCP00000033610	ENSSSCP00000014707	Uncharacterized protein.	Coiled-coil domain containing 105.	0.827
A0A286ZPT4_PIG	CXHXorf66	ENSSSCP00000033610	ENSSSCP00000013518	Uncharacterized protein.	Uncharacterized protein.	0.868
A0A286ZPT4_PIG	MRPS11	ENSSSCP00000033610	ENSSSCP00000031627	Uncharacterized protein.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.870
A0A286ZPT4_PIG	MRPS7	ENSSSCP00000033610	ENSSSCP00000031553	Uncharacterized protein.	28S ribosomal protein S7, mitochondrial.	0.827
A0A286ZPT4_PIG	PWP2	ENSSSCP00000033610	ENSSSCP00000064459	Uncharacterized protein.	Uncharacterized protein.	0.712
A0A286ZPT4_PIG	RPS15	ENSSSCP00000033610	ENSSSCP00000045242	Uncharacterized protein.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.899
A0A286ZPT4_PIG	RPS27	ENSSSCP00000033610	ENSSSCP00000058333	Uncharacterized protein.	40S ribosomal protein S27.	0.844
A0A286ZPT4_PIG	RPS27L	ENSSSCP00000033610	ENSSSCP00000026227	Uncharacterized protein.	40S ribosomal protein S27.	0.884
A0A286ZPT4_PIG	RPS28	ENSSSCP00000033610	ENSSSCP00000014450	Uncharacterized protein.	40S ribosomal protein S28; Belongs to the eukaryotic ribosomal protein eS28 family.	0.951
A0A286ZPT4_PIG	RPS5	ENSSSCP00000033610	ENSSSCP00000044464	Uncharacterized protein.	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.947
A0A286ZPT4_PIG	RPSA	ENSSSCP00000033610	ENSSSCP00000059243	Uncharacterized protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteri [...]	0.948
A0A286ZPT4_PIG	RRP7A	ENSSSCP00000033610	ENSSSCP00000063970	Uncharacterized protein.	Ribosomal RNA processing 7 homolog A.	0.689
A0A287AQP3_PIG	A0A286ZPT4_PIG	ENSSSCP00000046277	ENSSSCP00000033610	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.899
A0A287AQP3_PIG	A0A5G2QQ40_PIG	ENSSSCP00000046277	ENSSSCP00000060403	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S27.	0.872
A0A287AQP3_PIG	CCDC105	ENSSSCP00000046277	ENSSSCP00000014707	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Coiled-coil domain containing 105.	0.883
A0A287AQP3_PIG	CXHXorf66	ENSSSCP00000046277	ENSSSCP00000013518	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.895
A0A287AQP3_PIG	LOC100623742	ENSSSCP00000046277	ENSSSCP00000026383	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.875
A0A287AQP3_PIG	MRPS11	ENSSSCP00000046277	ENSSSCP00000031627	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.911