23 items (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EXOSC6	Exosome component 6. (272 aa)
	EXOSC5	Exosome component 5. (299 aa)
	EXOSC10	Exosome component 10. (869 aa)
	DIS3L	DIS3 like exosome 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (1054 aa)
	EXOSC3	Exosome complex component RRP40 isoform 1. (275 aa)
	EXOSC4	Exosome complex component RRP41. (245 aa)
	EXOSC7	Uncharacterized protein. (349 aa)
	MTREX	Exosome RNA helicase MTR4. (1042 aa)
	A0A286ZMZ7_PIG	Uncharacterized protein. (142 aa)
	EXOSC9	Exosome component 9. (455 aa)
	GTPBP1	GTP binding protein 1. (691 aa)
	MPHOSPH6	M-phase phosphoprotein 6. (176 aa)
	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial. (784 aa)
	WDR74	Uncharacterized protein. (388 aa)
	ZFC3H1	Zinc finger C3H1-type containing. (1910 aa)
	DIS3L2	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase, such as ZCCHC11/TUT4. Mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. Mediates degradation of uridylated pre-let-7 miRNAs, contributing to the maintenance of embryonic stem (ES) cells. Essential for correct mi [...] (914 aa)
	CARHSP1	Calcium regulated heat stable protein 1. (146 aa)
	EXOSC8	Exosome component 8. (281 aa)
	DIS3	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (958 aa)
	NVL	Nuclear VCP like. (868 aa)
	EXOSC1	Exosome component 1. (255 aa)
	EXOSC2	Exosome component 2. (271 aa)
	SUPV3L1	Suv3 like RNA helicase. (788 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A286ZMZ7_PIG	DIS3	ENSSSCP00000033000	ENSSSCP00000060654	Uncharacterized protein.	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family.	0.680
A0A286ZMZ7_PIG	DIS3L	ENSSSCP00000033000	ENSSSCP00000005318	Uncharacterized protein.	DIS3 like exosome 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family.	0.627
A0A286ZMZ7_PIG	DIS3L2	ENSSSCP00000033000	ENSSSCP00000056716	Uncharacterized protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase, such as ZCCHC11/TUT4. Mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. Mediates degradation of uridylated pre-let-7 miRNAs, contributing to the maintenance of embryonic stem (ES) cells. Essential for correct mi [...]	0.471
A0A286ZMZ7_PIG	EXOSC1	ENSSSCP00000033000	ENSSSCP00000069176	Uncharacterized protein.	Exosome component 1.	0.871
A0A286ZMZ7_PIG	EXOSC10	ENSSSCP00000033000	ENSSSCP00000003698	Uncharacterized protein.	Exosome component 10.	0.881
A0A286ZMZ7_PIG	EXOSC2	ENSSSCP00000033000	ENSSSCP00000071461	Uncharacterized protein.	Exosome component 2.	0.804
A0A286ZMZ7_PIG	EXOSC3	ENSSSCP00000033000	ENSSSCP00000005748	Uncharacterized protein.	Exosome complex component RRP40 isoform 1.	0.838
A0A286ZMZ7_PIG	EXOSC4	ENSSSCP00000033000	ENSSSCP00000006334	Uncharacterized protein.	Exosome complex component RRP41.	0.769
A0A286ZMZ7_PIG	EXOSC5	ENSSSCP00000033000	ENSSSCP00000003265	Uncharacterized protein.	Exosome component 5.	0.844
A0A286ZMZ7_PIG	EXOSC6	ENSSSCP00000033000	ENSSSCP00000002934	Uncharacterized protein.	Exosome component 6.	0.767
A0A286ZMZ7_PIG	EXOSC7	ENSSSCP00000033000	ENSSSCP00000012048	Uncharacterized protein.	Uncharacterized protein.	0.810
A0A286ZMZ7_PIG	EXOSC8	ENSSSCP00000033000	ENSSSCP00000060162	Uncharacterized protein.	Exosome component 8.	0.795
A0A286ZMZ7_PIG	EXOSC9	ENSSSCP00000033000	ENSSSCP00000034219	Uncharacterized protein.	Exosome component 9.	0.838
A0A286ZMZ7_PIG	MPHOSPH6	ENSSSCP00000033000	ENSSSCP00000042263	Uncharacterized protein.	M-phase phosphoprotein 6.	0.901
A0A286ZMZ7_PIG	MTREX	ENSSSCP00000033000	ENSSSCP00000017920	Uncharacterized protein.	Exosome RNA helicase MTR4.	0.795
CARHSP1	DIS3	ENSSSCP00000057150	ENSSSCP00000060654	Calcium regulated heat stable protein 1.	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family.	0.466
CARHSP1	DIS3L	ENSSSCP00000057150	ENSSSCP00000005318	Calcium regulated heat stable protein 1.	DIS3 like exosome 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family.	0.466
CARHSP1	DIS3L2	ENSSSCP00000057150	ENSSSCP00000056716	Calcium regulated heat stable protein 1.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase, such as ZCCHC11/TUT4. Mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. Mediates degradation of uridylated pre-let-7 miRNAs, contributing to the maintenance of embryonic stem (ES) cells. Essential for correct mi [...]	0.466
CARHSP1	EXOSC10	ENSSSCP00000057150	ENSSSCP00000003698	Calcium regulated heat stable protein 1.	Exosome component 10.	0.419
CARHSP1	EXOSC4	ENSSSCP00000057150	ENSSSCP00000006334	Calcium regulated heat stable protein 1.	Exosome complex component RRP41.	0.430