STRINGSTRING
KHNYN KHNYN A0A287AUE3_PIG A0A287AUE3_PIG CHTOP CHTOP ZC3H12C ZC3H12C NUDT21 NUDT21 NCBP1 NCBP1 SNRPC SNRPC A0A5G2QLG5_PIG A0A5G2QLG5_PIG STRAP STRAP C1QBP C1QBP A0A5G2QKX6_PIG A0A5G2QKX6_PIG YTHDF2 YTHDF2 LOC102161120 LOC102161120 PCBP4 PCBP4 CELF6 CELF6 SLIRP SLIRP HNRNPA0 HNRNPA0 RBFOX1 RBFOX1 EIF3D EIF3D LSM14A LSM14A A0A287AVU1_PIG A0A287AVU1_PIG YTHDF3 YTHDF3 TACO1 TACO1 RBMS2 RBMS2 CELF4 CELF4 YTHDC1 YTHDC1 PABPC5 PABPC5 ARC ARC SHFL SHFL TP53 TP53 ANGEL2 ANGEL2 RBM14 RBM14 F1SF34_PIG F1SF34_PIG BTG4 BTG4 PCF11 PCF11 NUP98 NUP98 DND1 DND1 ETF1 ETF1 CCDC105 CCDC105 NANOS3 NANOS3 CALR CALR ELAVL3 ELAVL3 ELAVL1 ELAVL1 EIF4G2 EIF4G2 RPS13 RPS13 CPSF7 CPSF7 TUT1 TUT1 UPF3B UPF3B FUBP3 FUBP3 TEX13B TEX13B LOC100153087 LOC100153087 ZC3H12B ZC3H12B DDX3X DDX3X EIF4A2 EIF4A2 GNL3 GNL3 RBM15B RBM15B RBMS3 RBMS3 EIF3A EIF3A CSTF2T CSTF2T SRRM4 SRRM4 DENR DENR PIWIL1 PIWIL1 SLC4A1AP SLC4A1AP LRPPRC LRPPRC SRBD1 SRBD1 LUC7L LUC7L TXNDC11 TXNDC11 RBM38 RBM38 RBM15 RBM15 EXOSC4 EXOSC4 PTBP3 PTBP3 PUM3 PUM3 LARP6 LARP6 SECISBP2L SECISBP2L RBPMS2 RBPMS2 MBD2 MBD2 SYNCRIP SYNCRIP DPPA5 DPPA5 ZC3H12D ZC3H12D SERBP1 SERBP1 FUBP1 FUBP1 LIN28A LIN28A PARK7 PARK7 NANOS2 NANOS2 N4BP1 N4BP1 EDC3 EDC3 CPEB1 CPEB1 IREB2 IREB2 APOBEC1 APOBEC1 CSDC2 CSDC2 A0A287B578_PIG A0A287B578_PIG CELF1 CELF1 QKI QKI RPL13A RPL13A RBM47 RBM47 CNBP CNBP DHX33 DHX33 EIF4G1 EIF4G1 LSM14B LSM14B MYEF2 MYEF2 CPEB3 CPEB3 THOC2 THOC2 LIN28B LIN28B ELAVL4 ELAVL4 RBMS1 RBMS1 ZNF385A ZNF385A ZC3H12A ZC3H12A G3BP2 G3BP2 SRRM2 SRRM2 CPEB4 CPEB4 CELF3 CELF3 JRK JRK SHMT2 SHMT2 DDX5 DDX5 PABPC4L PABPC4L CARHSP1 CARHSP1 RC3H2 RC3H2 SSB SSB SRSF1 SRSF1 SECISBP2 SECISBP2 RRBP1 RRBP1 CSTF3 CSTF3 ACO1 ACO1 CLUH CLUH RBM25 RBM25 HNRNPLL HNRNPLL SRSF4 SRSF4 LOC110258135 LOC110258135 RAVER2 RAVER2 AGO2 AGO2 ZFP36L1 ZFP36L1 EXOSC8 EXOSC8 RBPMS RBPMS LOC102162486 LOC102162486 NXF1 NXF1 RBM46 RBM46 PCBP1 PCBP1 DCP1B DCP1B ZFP36 ZFP36 PIWIL2 PIWIL2 CSTF2 CSTF2 FYTTD1 FYTTD1 TRA2B TRA2B PAIP2 PAIP2 I3LBC7_PIG I3LBC7_PIG IGF2BP1 IGF2BP1 I3L8W3_PIG I3L8W3_PIG I3L8K3_PIG I3L8K3_PIG SRRM3 SRRM3 ZFP36L2 ZFP36L2 POLDIP3 POLDIP3 SAMD4A SAMD4A ALYREF ALYREF LOC100515533 LOC100515533 LOC100526209 LOC100526209 TEX13A TEX13A EIF2S2 EIF2S2 RNF20 RNF20 FXR2 FXR2 NCBP3 NCBP3 CASC3 CASC3 LARP1 LARP1 EIF4A3 EIF4A3 RSL1D1 RSL1D1 LARP4B LARP4B PCBP2 PCBP2 YTHDF1 YTHDF1 AQR AQR DAZAP1 DAZAP1 TPR TPR MRPS7 MRPS7 MRPS11 MRPS11 SPEN SPEN C12orf50 C12orf50 PPIE PPIE RBM5 RBM5 RBFOX2 RBFOX2 A0A286ZLG7_PIG A0A286ZLG7_PIG RBFOX3 RBFOX3 TIAL1 TIAL1 RIDA RIDA DXO DXO CELF2 CELF2 NOVA2 NOVA2 STAU1 STAU1 EXOSC9 EXOSC9 SHMT1 SHMT1 G3BP1 G3BP1 RBM24 RBM24 NSRP1 NSRP1 NANOS1 NANOS1 HNRNPU HNRNPU CDC40 CDC40 ESRP1 ESRP1 SF3B1 SF3B1 FUS FUS ESRP2 ESRP2 EIF4ENIF1 EIF4ENIF1 FMR1 FMR1 LARP4 LARP4 SAMD4B SAMD4B MRPL13 MRPL13 KHDRBS3 KHDRBS3 RBMX RBMX DHX9 DHX9 ILF3 ILF3 IGF2BP2 IGF2BP2 ZC3H11A ZC3H11A TIA1 TIA1 DHX36 DHX36 PCBP3 PCBP3 SNIP1 SNIP1 HNRNPK HNRNPK KHDRBS1 KHDRBS1 YBX3 YBX3 UTP23 UTP23 XPO5 XPO5 PTBP2 PTBP2 SNRNP35 SNRNP35 NOCT NOCT LOC110257686 LOC110257686 MEX3D MEX3D RBM8A RBM8A DCP1A DCP1A FXR1 FXR1 METTL3 METTL3 PPP1R8 PPP1R8 GEMIN5 GEMIN5 SRSF5 SRSF5 KHDRBS2 KHDRBS2 CPEB2 CPEB2 RPL24 RPL24 PURB PURB SLPI SLPI MARF1 MARF1 LUC7L3 LUC7L3 DAZL DAZL BOLL BOLL EIF2A EIF2A LOC100154946 LOC100154946 A0A5G2RGM7_PIG A0A5G2RGM7_PIG SUPT5H SUPT5H CPSF6 CPSF6 A1CF A1CF STAU2 STAU2 ZCCHC13 ZCCHC13 TARDBP TARDBP LOC102164431 LOC102164431 CRYZ CRYZ NOVA1 NOVA1 SCAF8 SCAF8 RBM44 RBM44 DHFR DHFR RPS3 RPS3 MECP2 MECP2 PTBP1 PTBP1 KHSRP KHSRP RPL35 RPL35 PUM1 PUM1 WDR25 WDR25 RC3H1 RC3H1 UNK UNK NYNRIN NYNRIN RNF40 RNF40 PUM2 PUM2 EIF4G3 EIF4G3 RBM4B RBM4B EEFSEC EEFSEC SNRNP70 SNRNP70 IGF2BP3 IGF2BP3 RPS5 RPS5 NUDT16 NUDT16 THOC5 THOC5 MRPL12 MRPL12 DDX6 DDX6 METTL14 METTL14 ZAR1L ZAR1L
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KHNYNKH and NYN domain containing. (663 aa)
A0A287AUE3_PIGUncharacterized protein. (143 aa)
CHTOPChromatin target of PRMT1. (277 aa)
ZC3H12CPutative ribonuclease ZC3H12C isoform X1. (885 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (237 aa)
NCBP1Nuclear cap binding protein subunit 1. (1117 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (181 aa)
A0A5G2QLG5_PIGUncharacterized protein. (125 aa)
STRAPSerine-threonine kinase receptor-associated protein. (350 aa)
C1QBPMitochondrial complement component 1 Q subcomponent-binding protein. (281 aa)
A0A5G2QKX6_PIGCPSF_A domain-containing protein. (200 aa)
YTHDF2YTH N6-methyladenosine RNA binding protein 2. (600 aa)
LOC102161120Uncharacterized protein. (392 aa)
PCBP4Poly(rC) binding protein 4. (404 aa)
CELF6Uncharacterized protein. (610 aa)
SLIRPRRM domain-containing protein. (147 aa)
HNRNPA0Heterogeneous nuclear ribonucleoprotein A0. (302 aa)
RBFOX1RNA binding fox-1 homolog 1. (577 aa)
EIF3DEukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, a complex required for several steps in the initiation of protein synthesis of a specialized repertoire of mRNAs. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl- tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required [...] (548 aa)
LSM14AUncharacterized protein. (475 aa)
A0A287AVU1_PIGUncharacterized protein. (110 aa)
YTHDF3YTH domain-containing family protein 3 isoform b. (588 aa)
TACO1Uncharacterized protein. (321 aa)
RBMS2RNA binding motif single stranded interacting protein 2. (457 aa)
CELF4CUGBP Elav-like family member 4. (545 aa)
YTHDC1YTH domain containing 1. (743 aa)
PABPC5Poly(A) binding protein cytoplasmic 5. (382 aa)
ARCActivity regulated cytoskeleton associated protein. (396 aa)
SHFLUncharacterized protein. (286 aa)
TP53Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression. Its pro-apoptotic activity is activated via its intera [...] (442 aa)
ANGEL2Protein angel homolog 2 isoform a. (544 aa)
RBM14RNA-binding protein 14 isoform 1. (669 aa)
F1SF34_PIGRRM domain-containing protein. (170 aa)
BTG4BTG anti-proliferation factor 4. (225 aa)
PCF11Pre-mRNA cleavage complex 2 protein Pcf11 isoform 1. (1683 aa)
NUP98Nucleoporin 98. (1753 aa)
DND1DND microRNA-mediated repression inhibitor 1. (353 aa)
ETF1Eukaryotic peptide chain release factor subunit 1 isoform 1. (437 aa)
CCDC105Coiled-coil domain containing 105. (495 aa)
NANOS3Nanos C2HC-type zinc finger 3; Belongs to the nanos family. (261 aa)
CALRCalreticulin; Calcium-binding chaperone that promotes folding, oligomeric assembly and quality control in the endoplasmic reticulum (ER) via the calreticulin/calnexin cycle. This lectin interacts transiently with almost all of the monoglucosylated glycoproteins that are synthesized in the ER. Interacts with the DNA-binding domain of NR3C1 and mediates its nuclear export (By similarity). Involved in maternal gene expression regulation. May participate in oocyte maturation via the regulation of calcium homeostasis; Belongs to the calreticulin family. (417 aa)
ELAVL3ELAV-like protein; Belongs to the RRM elav family. (367 aa)
ELAVL1ELAV-like protein; Belongs to the RRM elav family. (326 aa)
EIF4G2Eukaryotic translation initiation factor 4 gamma 2. (949 aa)
RPS1340S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (213 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (471 aa)
TUT1RRM domain-containing protein. (871 aa)
UPF3BUPF3B regulator of nonsense mediated mRNA decay. (483 aa)
FUBP3Far upstream element binding protein 3. (714 aa)
TEX13BRanBP2-type domain-containing protein. (387 aa)
LOC100153087Uncharacterized protein. (614 aa)
ZC3H12BZinc finger CCCH-type containing 12B. (836 aa)
DDX3XATP-dependent RNA helicase DDX3X isoform 1; Belongs to the DEAD box helicase family. (662 aa)
EIF4A2Eukaryotic translation initiation factor 4A2; Belongs to the DEAD box helicase family. (410 aa)
GNL3G protein nucleolar 3. (551 aa)
RBM15BRNA binding motif protein 15B. (854 aa)
RBMS3RNA binding motif single stranded interacting protein 3. (458 aa)
EIF3AEukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...] (1376 aa)
CSTF2TCleavage stimulation factor subunit 2 tau variant. (615 aa)
SRRM4Serine/arginine repetitive matrix 4. (611 aa)
DENRDensity-regulated protein; Belongs to the DENR family. (198 aa)
PIWIL1Piwi like RNA-mediated gene silencing 1; Belongs to the argonaute family. (861 aa)
SLC4A1APSolute carrier family 4 member 1 adaptor protein. (737 aa)
LRPPRCLeucine-rich PPR motif-containing protein, mitochondrial. (1394 aa)
SRBD1S1 RNA binding domain 1. (957 aa)
LUC7LLUC7 like. (459 aa)
TXNDC11Thioredoxin domain-containing protein 11 isoform 2. (951 aa)
RBM38RNA-binding region (RNP1, RRM) containing 1. (239 aa)
RBM15RNA binding motif protein 15. (1006 aa)
EXOSC4Exosome complex component RRP41. (245 aa)
PTBP3Polypyrimidine tract-binding protein 3 isoform 3. (557 aa)
PUM3Pumilio RNA binding family member 3. (648 aa)
LARP6La ribonucleoprotein domain family member 6. (462 aa)
SECISBP2LSECIS binding protein 2 like. (1097 aa)
RBPMS2RNA binding protein, mRNA processing factor 2. (212 aa)
MBD2Methyl-CpG binding domain protein 2. (407 aa)
SYNCRIPSynaptotagmin binding cytoplasmic RNA interacting protein. (623 aa)
DPPA5Developmental pluripotency-associated 5 protein. (117 aa)
ZC3H12DZinc finger CCCH-type containing 12D. (507 aa)
SERBP1Plasminogen activator inhibitor 1 RNA-binding protein isoform 1. (407 aa)
FUBP1Far upstream element-binding protein 1 isoform X2. (664 aa)
LIN28AProtein lin-28 homolog A. (205 aa)
PARK7DJ-1 protein. (189 aa)
NANOS2Nanos C2HC-type zinc finger 2; Belongs to the nanos family. (138 aa)
N4BP1NEDD4-binding protein 1. (897 aa)
EDC3Enhancer of mRNA decapping 3. (508 aa)
CPEB1Uncharacterized protein. (602 aa)
IREB2Iron-responsive element-binding protein 2; RNA-binding protein that binds to iron-responsive elements (IRES), which are stem-loop structures found in the 5'-UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'-UTR of transferrin receptor mRNA. Binding to the IRE element in ferritin results in the repression of its mRNA translation. Binding of the protein to the transferrin receptor mRNA inhibits the degradation of this otherwise rapidly degraded mRNA. (963 aa)
APOBEC1Apolipoprotein B mRNA editing enzyme catalytic subunit 1. (236 aa)
CSDC2Cold shock domain containing C2. (153 aa)
A0A287B578_PIGUncharacterized protein. (103 aa)
CELF1CUGBP Elav-like family member 1. (551 aa)
QKIProtein quaking; RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs such as MBP and CDKN1B which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of MAG pre-mRNA. Acts as a translational repressor (By similarity). (338 aa)
RPL13A60S ribosomal protein L13a; Associated with ribosomes but is not required for canonical ribosome function and has extra-ribosomal functions Component of the GAIT (gamma interferon-activated inhibitor of translation) complex which mediates interferon-gamma-induced transcript-selective translation inhibition in inflammation processes. Upon interferon-gamma activation and subsequent phosphorylation dissociates from the ribosome and assembles into the GAIT complex which binds to stem loop-containing GAIT elements in the 3'-UTR of diverse inflammatory mRNAs (such as ceruplasmin) and suppres [...] (500 aa)
RBM47RNA-binding protein 47 isoform X1. (686 aa)
CNBPCCHC-type zinc finger nucleic acid binding protein. (167 aa)
DHX33DEAH-box helicase 33. (702 aa)
EIF4G1Eukaryotic translation initiation factor 4 gamma 1. (1613 aa)
LSM14BProtein LSM14 homolog B isoform X5. (502 aa)
MYEF2Myelin expression factor 2. (576 aa)
CPEB3Cytoplasmic polyadenylation element binding protein 3. (758 aa)
THOC2THO complex 2. (1588 aa)
LIN28BLin-28 homolog B. (258 aa)
ELAVL4ELAV-like protein; Belongs to the RRM elav family. (487 aa)
RBMS1RNA binding motif single stranded interacting protein 1. (443 aa)
ZNF385AZinc finger protein 385A. (406 aa)
ZC3H12AZinc finger CCCH-type containing 12A. (582 aa)
G3BP2Ras GTPase-activating protein-binding protein 2 isoform X1. (481 aa)
SRRM2Serine/arginine repetitive matrix 2. (2662 aa)
CPEB4Cytoplasmic polyadenylation element binding protein 4. (725 aa)
CELF3CUGBP Elav-like family member 3. (495 aa)
JRKJrk helix-turn-helix protein. (518 aa)
SHMT2Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (503 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (617 aa)
PABPC4LPoly(A) binding protein cytoplasmic 4 like. (341 aa)
CARHSP1Calcium regulated heat stable protein 1. (146 aa)
RC3H2Ring finger and CCCH-type domains 2. (1192 aa)
SSBSmall RNA binding exonuclease protection factor La. (401 aa)
SRSF1Serine/arginine-rich splicing factor 1; Plays a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Can stimulate binding of U1 snRNP to a 5'-splice site- containing pre-mRNA. Binds to purine-rich RNA sequences, either the octamer, 5'-RGAAGAAC-3' (r=A or G) or the decamers, AGGACAGAGC/AGGACGAAGC. Binds preferentially to the 5'-CGAGGCG-3' motif in vitro. Three copies of the octame [...] (253 aa)
SECISBP2Selenocysteine insertion sequence-binding protein 2 isoform 1. (848 aa)
RRBP1Ribosome binding protein 1. (1523 aa)
CSTF3Suf domain-containing protein. (716 aa)
ACO1Aconitase 1; Belongs to the aconitase/IPM isomerase family. (889 aa)
CLUHClustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. Specifically binds mRNAs of nuclear- encoded mitochondrial proteins in the cytoplasm and regulates transport or translation of these transcripts close to mitochondria, playing a role in mitochondrial biogenesis; Belongs to the CLU family. (1614 aa)
RBM25RNA binding motif protein 25. (862 aa)
HNRNPLLHeterogeneous nuclear ribonucleoprotein L-like isoform 1. (547 aa)
SRSF4Serine and arginine rich splicing factor 4. (489 aa)
LOC110258135Uncharacterized protein. (177 aa)
RAVER2Ribonucleoprotein, PTB binding 2. (691 aa)
AGO2Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] (874 aa)
ZFP36L1ZFP36 ring finger protein like 1. (348 aa)
EXOSC8Exosome component 8. (281 aa)
RBPMSRNA binding protein, mRNA processing factor. (223 aa)
LOC102162486FMC1-LUC7L2 readthrough. (392 aa)
NXF1Nuclear RNA export factor 1. (721 aa)
RBM46RNA binding motif protein 46. (533 aa)
PCBP1Poly(rC) binding protein 1. (356 aa)
DCP1BDecapping mRNA 1B. (559 aa)
ZFP36Uncharacterized protein. (372 aa)
PIWIL2Piwi like RNA-mediated gene silencing 2; Belongs to the argonaute family. (985 aa)
CSTF2Cleavage stimulation factor subunit 2. (592 aa)
FYTTD1Forty-two-three domain containing 1. (317 aa)
TRA2BTransformer 2 beta homolog. (288 aa)
PAIP2Poly(A) binding protein interacting protein 2. (126 aa)
I3LBC7_PIGPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (110 aa)
IGF2BP1Insulin-like growth factor 2 mRNA-binding protein 1 isoform X1. (577 aa)
I3L8W3_PIG40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (108 aa)
I3L8K3_PIGUncharacterized protein. (170 aa)
SRRM3Serine/arginine repetitive matrix 3. (746 aa)
ZFP36L2ZFP36 ring finger protein like 2. (564 aa)
POLDIP3Polymerase delta-interacting protein 3 isoform X1. (420 aa)
SAMD4ASterile alpha motif domain containing 4A. (718 aa)
ALYREFAly/REF export factor. (348 aa)
LOC100515533SLBP_RNA_bind domain-containing protein. (240 aa)
LOC100526209Uncharacterized protein. (788 aa)
TEX13ARanBP2-type domain-containing protein. (389 aa)
EIF2S2Eukaryotic translation initiation factor 2 subunit beta. (333 aa)
RNF20E3 ubiquitin protein ligase; Belongs to the BRE1 family. (975 aa)
FXR2FMR1 autosomal homolog 2. (667 aa)
NCBP3Nuclear cap-binding protein subunit 3. (615 aa)
CASC3CASC3 exon junction complex subunit. (633 aa)
LARP1La ribonucleoprotein domain family member 1. (1101 aa)
EIF4A3Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...] (488 aa)
RSL1D1Ribosomal L1 domain-containing protein 1. (493 aa)
LARP4BHTH La-type RNA-binding domain-containing protein. (1587 aa)
PCBP2Poly(rC) binding protein 2. (467 aa)
YTHDF1YTH N6-methyladenosine RNA binding protein 1. (652 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1492 aa)
DAZAP1DAZ associated protein 1. (417 aa)
TPRTranslocated promoter region, nuclear basket protein. (2518 aa)
MRPS728S ribosomal protein S7, mitochondrial. (242 aa)
MRPS11Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (196 aa)
SPENSpen family transcriptional repressor. (2726 aa)
C12orf50Chromosome 12 open reading frame 50. (422 aa)
PPIEPeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (310 aa)
RBM5RNA binding motif protein 5. (893 aa)
RBFOX2RNA binding fox-1 homolog 2. (578 aa)
A0A286ZLG7_PIGUncharacterized protein. (135 aa)
RBFOX3RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events. (371 aa)
TIAL1TIA1 cytotoxic granule associated RNA binding protein like 1. (395 aa)
RIDAReactive intermediate imine deaminase A homolog. (137 aa)
DXODecapping exoribonuclease. (395 aa)
CELF2Uncharacterized protein. (542 aa)
NOVA2NOVA alternative splicing regulator 2. (492 aa)
STAU1Staufen double-stranded RNA binding protein 1. (687 aa)
EXOSC9Exosome component 9. (455 aa)
SHMT1Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (646 aa)
G3BP1G3BP stress granule assembly factor 1. (495 aa)
RBM24RRM domain-containing protein. (528 aa)
NSRP1Nuclear speckle splicing regulatory protein 1. (614 aa)
NANOS1Nanos C2HC-type zinc finger 1; Belongs to the nanos family. (284 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U isoform a. (825 aa)
CDC40Pre-mRNA-processing factor 17. (579 aa)
ESRP1Epithelial splicing regulatory protein 1. (677 aa)
SF3B1Splicing factor 3B subunit 1 isoform 1. (1304 aa)
FUSFUS RNA binding protein. (518 aa)
ESRP2Epithelial splicing regulatory protein 2. (717 aa)
EIF4ENIF1Eukaryotic translation initiation factor 4E nuclear import factor 1. (984 aa)
FMR1Fragile X mental retardation protein 1. (632 aa)
LARP4La ribonucleoprotein domain family member 4. (821 aa)
SAMD4BSterile alpha motif domain containing 4B. (827 aa)
MRPL1339S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family. (197 aa)
KHDRBS3KH RNA binding domain containing, signal transduction associated 3. (352 aa)
RBMXRNA binding motif protein X-linked. (408 aa)
DHX9ATP-dependent RNA helicase A. (1384 aa)
ILF3Interleukin enhancer binding factor 3. (889 aa)
IGF2BP2Insulin like growth factor 2 mRNA binding protein 2. (592 aa)
ZC3H11AZinc finger CCCH domain-containing protein 11A isoform X1. (816 aa)
TIA1TIA1 cytotoxic granule associated RNA binding protein. (386 aa)
DHX36DEAH (Asp-Glu-Ala-His) box polypeptide 36 tv1. (1012 aa)
PCBP3Uncharacterized protein. (361 aa)
SNIP1Smad nuclear interacting protein 1. (395 aa)
HNRNPKUncharacterized protein. (464 aa)
KHDRBS1KH RNA binding domain containing, signal transduction associated 1. (443 aa)
YBX3Y-box binding protein 3. (380 aa)
UTP23UTP23 small subunit processome component. (251 aa)
XPO5Exportin 5. (1167 aa)
PTBP2Polypyrimidine tract binding protein 2. (506 aa)
SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (246 aa)
NOCTNocturnin. (427 aa)
LOC110257686NTF2 domain-containing protein. (523 aa)
MEX3DRNA-binding protein MEX3D isoform 1. (649 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
DCP1AmRNA-decapping enzyme 1A; Necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Contributes to the transactivation of target genes after stimulation by TGFB1; Belongs to the DCP1 family. (580 aa)
FXR1Fragile X mental retardation syndrome-related protein 1 isoform X1. (677 aa)
METTL3N6-adenosine-methyltransferase catalytic subunit; Belongs to the MT-A70-like family. (580 aa)
PPP1R8Protein phosphatase 1 regulatory subunit 8. (351 aa)
GEMIN5Gem nuclear organelle associated protein 5. (1511 aa)
SRSF5Serine and arginine rich splicing factor 5. (271 aa)
KHDRBS2KH RNA binding domain containing, signal transduction associated 2. (349 aa)
CPEB2Cytoplasmic polyadenylation element binding protein 2. (1035 aa)
RPL24Ribosomal protein L24. (217 aa)
PURBTranscriptional activator protein Pur-beta. (308 aa)
SLPIAntileukoproteinase; Acid-stable proteinase inhibitor with strong affinities for trypsin, chymotrypsin, elastase, and cathepsin G. Modulates the inflammatory and immune responses after bacterial infection, and after infection by the intracellular parasite L.major. Down-regulates responses to bacterial lipopolysaccharide (LPS). Plays a role in regulating the activation of NF-kappa-B and inflammatory responses. Has antimicrobial activity against mycobacteria, but not against salmonella. Contributes to normal resistance against infection by M.tuberculosis. Required for normal resistance t [...] (170 aa)
MARF1Meiosis regulator and mRNA stability factor 1. (1718 aa)
LUC7L3LUC7 like 3 pre-mRNA splicing factor. (638 aa)
DAZLDeleted in azoospermia-like protein. (295 aa)
BOLLBoule homolog, RNA binding protein. (430 aa)
EIF2AEukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (591 aa)
LOC100154946Uncharacterized protein. (355 aa)
A0A5G2RGM7_PIGUncharacterized protein. (98 aa)
SUPT5HTranscription elongation factor SPT5. (1085 aa)
CPSF6Cleavage and polyadenylation specificity factor subunit 6 isoform 2. (588 aa)
A1CFAPOBEC1 complementation factor isoform 2. (595 aa)
STAU2Staufen double-stranded RNA binding protein 2. (632 aa)
ZCCHC13Zinc finger CCHC-type containing 13. (171 aa)
TARDBPTAR DNA binding protein. (414 aa)
LOC102164431NTF2 domain-containing protein. (519 aa)
CRYZQuinone oxidoreductase; Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding (By similarity). (330 aa)
NOVA1NOVA alternative splicing regulator 1. (487 aa)
SCAF8SR-related CTD associated factor 8. (1347 aa)
RBM44RNA binding motif protein 44. (1056 aa)
DHFRDihydrofolate reductase; Key enzyme in folate metabolism. Contributes to the de novo mitochondrial thymidylate biosynthesis pathway. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. Binds its own mRNA and that of DHFR2 (By similarity). (187 aa)
RPS340S ribosomal protein S3; Involved in translation as a component of the 40S small ribosomal subunit. Has endonuclease activity and plays a role in repair of damaged DNA. Cleaves phosphodiester bonds of DNAs containing altered bases with broad specificity and cleaves supercoiled DNA more efficiently than relaxed DNA. Displays high binding affinity for 7,8- dihydro-8-oxoguanine (8-oxoG), a common DNA lesion caused by reactive oxygen species (ROS). Has also been shown to bind with similar affinity to intact and damaged DNA. Stimulates the N-glycosylase activity of the base excision protei [...] (259 aa)
MECP2Methyl-CpG-binding protein 2; Chromosomal protein that binds to methylated DNA. It can bind specifically to a single methyl-CpG pair. It is not influenced by sequences flanking the methyl-CpGs. Binds both 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC)-containing DNA, with a preference for 5-methylcytosine (5mC). (489 aa)
PTBP1Polypyrimidine tract-binding protein 1; Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre- mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre- mRNA. Represses the splicing of MAPT/Tau exon 10 (By similarity). (647 aa)
KHSRPKH-type splicing regulatory protein. (784 aa)
RPL3560S ribosomal protein L35; Component of the large ribosomal subunit. Belongs to the universal ribosomal protein uL29 family. (123 aa)
PUM1Pumilio RNA binding family member 1. (1189 aa)
WDR25WD repeat domain 25. (536 aa)
RC3H1Ring finger and CCCH-type domains 1. (1132 aa)
UNKUnk zinc finger. (830 aa)
NYNRINNYN domain and retroviral integrase containing. (1900 aa)
RNF40E3 ubiquitin protein ligase; Belongs to the BRE1 family. (1003 aa)
PUM2Pumilio RNA binding family member 2. (1072 aa)
EIF4G3Eukaryotic translation initiation factor 4 gamma 3. (1658 aa)
RBM4BRNA-binding protein 4B; Required for the translational activation of PER1 mRNA in response to circadian clock. Binds directly to the 3'-UTR of the PER1 mRNA (By similarity). (369 aa)
EEFSECEukaryotic elongation factor, selenocysteine-tRNA specific. (646 aa)
SNRNP70Small nuclear ribonucleoprotein U1 subunit 70. (436 aa)
IGF2BP3Insulin-like growth factor 2 mRNA-binding protein 3. (586 aa)
RPS540S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (240 aa)
NUDT16Nudix hydrolase 16. (211 aa)
THOC5THO complex subunit 5 homolog isoform X1. (694 aa)
MRPL12Mitochondrial ribosomal protein L12. (198 aa)
DDX6Putative ATP-dependent RNA helicase DDX6 isoform X1; Belongs to the DEAD box helicase family. (483 aa)
METTL14N6-adenosine-methyltransferase non-catalytic subunit; Belongs to the MT-A70-like family. (456 aa)
ZAR1LZygote arrest 1 like. (374 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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