STRINGSTRING
DHH DHH REC8 REC8 LOC100525409 LOC100525409 ADAM21 ADAM21 BAX BAX CSMD2 CSMD2 GATA6 GATA6 CITED2 CITED2 SMAD4 SMAD4 ARID4A ARID4A LRRC6 LRRC6 NHLH1 NHLH1 RAB13 RAB13 NHLH2 NHLH2 WNT2B WNT2B TFAP2C TFAP2C BCL2L11 BCL2L11 LHCGR LHCGR MSH2 MSH2 SRD5A2 SRD5A2 F1RWC9_PIG F1RWC9_PIG SFRP2 SFRP2 HMGB2 HMGB2 F1RJL7_PIG F1RJL7_PIG F1RJK7_PIG F1RJK7_PIG CRKL CRKL TMF1 TMF1 NR0B1 NR0B1 AR AR ATRX ATRX FSHB FSHB KIF18A KIF18A CSMD1 CSMD1 HOXA11 HOXA11 LOC100521680 LOC100521680 SOX9 SOX9 WT1 WT1 EIF2S2 EIF2S2 ADAM29 ADAM29 FSHR FSHR HOXA9 HOXA9 GATA1 GATA1 HSD17B4 HSD17B4 FANCA FANCA RXFP2 RXFP2 YBX3 YBX3 GATA4 GATA4 ING2 ING2 SFRP1 SFRP1 ESR1 ESR1 TGFBR1 TGFBR1 BCL2L1 BCL2L1 A0A286ZTM7_PIG A0A286ZTM7_PIG SOX8 SOX8 ADGRG1 ADGRG1 SIX4 SIX4 RARA RARA ADAM20 ADAM20 WNT5A WNT5A SCAPER SCAPER H3F3A H3F3A ZFP42 ZFP42 TBC1D20 TBC1D20 PLEKHA1 PLEKHA1 GATA3 GATA3 COL9A3 COL9A3 LOC110258839 LOC110258839 A0A287AE08_PIG A0A287AE08_PIG LHX9 LHX9 A0A287AJR1_PIG A0A287AJR1_PIG REN REN BRIP1 BRIP1 NR5A1 NR5A1 SPATA2 SPATA2 RUSC1 RUSC1 PDGFRA PDGFRA LRP2 LRP2 SCX SCX INHBA INHBA TCF21 TCF21 PATZ1 PATZ1 KLHL10 KLHL10 SGPL1 SGPL1 NKX2-1 NKX2-1 AGO4 AGO4 ATN1 ATN1 A0A287BJG7_PIG A0A287BJG7_PIG NKX3-1 NKX3-1 A0A287BNZ6_PIG A0A287BNZ6_PIG AMH AMH LOC110258345 LOC110258345 FGF9 FGF9 PRDX4 PRDX4 SAFB2 SAFB2 KIT KIT DMRT1 DMRT1 WDR48 WDR48 A0A5G2RK49_PIG A0A5G2RK49_PIG ARID5B ARID5B
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DHHHedgehog protein; Intercellular signal essential for a variety of patterning events during development. (396 aa)
REC8Meiotic recombination protein REC8 homolog. (580 aa)
LOC100525409Uncharacterized protein. (745 aa)
ADAM21ADAM metallopeptidase domain 21. (735 aa)
BAXTrans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Belongs to the Gfo/Idh/MocA family. (480 aa)
CSMD2Uncharacterized protein. (1106 aa)
GATA6Transcription factor GATA-6; Transcriptional activator that regulates SEMA3C and PLXNA2. May regulate genes that protect epithelial cells from bacterial infection. Involved in gene regulation specifically in the gastric epithelium. Involved in bone morphogenetic protein (BMP)-mediated cardiac-specific gene expression. Binds to BMP response element (BMPRE) DNA sequences within cardiac activating regions. (592 aa)
CITED2Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2. (278 aa)
SMAD4Mothers against decapentaplegic homolog 4; Common SMAD (co-SMAD) is the coactivator and mediator of signal transduction by TGF-beta (transforming growth factor). Component of the heterotrimeric SMAD2/SMAD3-SMAD4 complex that forms in the nucleus and is required for the TGF-mediated signaling. Promotes binding of the SMAD2/SMAD4/FAST-1 complex to DNA and provides an activation function required for SMAD1 or SMAD2 to stimulate transcription. Component of the multimeric SMAD3/SMAD4/JUN/FOS complex which forms at the AP1 promoter site; required for synergistic transcriptional activity in r [...] (552 aa)
ARID4AAT-rich interaction domain 4A. (1279 aa)
LRRC6Leucine rich repeat containing 6. (472 aa)
NHLH1Nescient helix-loop-helix 1. (133 aa)
RAB13Uncharacterized protein. (203 aa)
NHLH2Nescient helix-loop-helix 2. (135 aa)
WNT2BProtein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (392 aa)
TFAP2CTranscription factor AP-2 gamma (Activating enhancer binding protein 2 gamma). (450 aa)
BCL2L11Uncharacterized protein. (433 aa)
LHCGRLutropin-choriogonadotropic hormone receptor; Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family. FSH/LSH/TSH subfamily. (696 aa)
MSH2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (920 aa)
SRD5A23-oxo-5-alpha-steroid 4-dehydrogenase 2; Converts testosterone (T) into 5-alpha-dihydrotestosterone (DHT) and progesterone or corticosterone into their corresponding 5- alpha-3-oxosteroids. It plays a central role in sexual differentiation and androgen physiology (By similarity). (346 aa)
F1RWC9_PIGHistone domain-containing protein. (142 aa)
SFRP2Uncharacterized protein. (294 aa)
HMGB2High mobility group protein B2; Multifunctional protein with various roles in different cellular compartments. May act in a redox sensitive manner. In the nucleus is an abundant chromatin-associated non-histone protein involved in transcription, chromatin remodeling and V(D)J recombination and probably other processes (By similarity). Binds DNA with a preference to non-canonical DNA structures such as single-stranded DNA. Can bent DNA and enhance DNA flexibility by looping thus providing a mechanism to promote activities on various gene promoters by enhancing transcription factor bindi [...] (210 aa)
F1RJL7_PIGUncharacterized protein. (767 aa)
F1RJK7_PIGUncharacterized protein. (760 aa)
CRKLCRK like proto-oncogene, adaptor protein. (303 aa)
TMF1TATA element modulatory factor 1. (1096 aa)
NR0B1Nuclear receptor subfamily 0 group B member 1; Orphan nuclear receptor. Component of a cascade required for the development of the hypothalamic-pituitary-adrenal-gonadal axis. Acts as a coregulatory protein that inhibits the transcriptional activity of other nuclear receptors through heterodimeric interactions. May also have a role in the development of the embryo and in the maintenance of embryonic stem cell pluripotency (By similarity). Belongs to the nuclear hormone receptor family. NR0 subfamily. (490 aa)
ARAndrogen receptor; Steroid hormone receptors are ligand-activated transcription factors that regulate eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. Transcription factor activity is modulated by bound coactivator and corepressor proteins like ZBTB7A that recruits NCOR1 and NCOR2 to the androgen response elements/ARE on target genes, negatively regulating androgen receptor signaling and androgen-induced cell proliferation. Transcription activation is also down-regulated by NR0B2. Activated, but not phosphorylated, by HIPK3 and ZIPK/DAPK3. (896 aa)
ATRXATRX chromatin remodeler. (2486 aa)
FSHBFollitropin subunit beta; Together with the alpha chain CGA constitutes follitropin, the follicle-stimulating hormone, and provides its biological specificity to the hormone heterodimer. Binds FSHR, a G protein-coupled receptor, on target cells to activate downstream signaling pathways. Follitropin is involved in follicle development and spermatogenesis in reproductive organs. (129 aa)
KIF18AKinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (904 aa)
CSMD1CUB and Sushi multiple domains 1. (3258 aa)
HOXA11Homeobox protein Hox-A11. (317 aa)
LOC100521680Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] (136 aa)
SOX9Transcription factor SOX-9; Transcriptional regulator that plays a role in chondrocytes differentiation and skeletal development. Binds to the COL2A1 promoter and activates COL2A1 expression, as part of a complex with ZNF219. (511 aa)
WT1Wilms tumor protein homolog; Transcription factor that plays an important role in cellular development and cell survival. Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3'. Regulates the expression of numerous target genes, including EPO. Plays an essential role for development of the urogenital system. It has a tumor suppressor as well as an oncogenic role in tumor formation. Function may be isoform-specific: isoforms lacking the KTS motif may act as transcription factors. Isoforms containing the KTS motif may bind mRNA and play a role in mRNA metabolism or splicing. Isofor [...] (523 aa)
EIF2S2Eukaryotic translation initiation factor 2 subunit beta. (333 aa)
ADAM29Uncharacterized protein. (721 aa)
FSHRFollicle-stimulating hormone receptor; G protein-coupled receptor for follitropin, the follicle- stimulating hormone. Through cAMP production activates the downstream PI3K-AKT and ERK1/ERK2 signaling pathways. (695 aa)
HOXA9Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (272 aa)
GATA1Erythroid transcription factor. (412 aa)
HSD17B4Peroxisomal multifunctional enzyme type 2 isoform 2. (737 aa)
FANCAFA complementation group A. (1484 aa)
RXFP2Relaxin family peptide receptor 2. (737 aa)
YBX3Y-box binding protein 3. (380 aa)
GATA4Transcription factor GATA-4 isoform 2. (442 aa)
ING2Inhibitor of growth protein. (280 aa)
SFRP1Secreted frizzled-related protein 1. (308 aa)
ESR1Estrogen receptor; Nuclear hormone receptor. The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. Ligand-dependent nuclear transactivation involves either direct homodimer binding to a palindromic estrogen response element (ERE) sequence or association with other DNA-binding transcription factors, such as AP-1/c-Jun, c-Fos, ATF-2, Sp1 and Sp3, to mediate ERE- independent signaling. Ligand binding induces a conformational change allowing subsequent or combinatorial a [...] (595 aa)
TGFBR1TGF-beta receptor type-1; Transmembrane serine/threonine kinase forming with the TGF- beta type II serine/threonine kinase receptor, TGFBR2, the non- promiscuous receptor for the TGF-beta cytokines TGFB1, TGFB2 and TGFB3. Transduces the TGFB1, TGFB2 and TGFB3 signal from the cell surface to the cytoplasm and is thus regulating a plethora of physiological and pathological processes including cell cycle arrest in epithelial and hematopoietic cells, control of mesenchymal cell proliferation and differentiation, wound healing, extracellular matrix production, immunosuppression and carcinog [...] (560 aa)
BCL2L1Bcl-2-like protein 1; Potent inhibitor of cell death. Inhibits activation of caspases. Appears to regulate cell death by blocking the voltage- dependent anion channel (VDAC) by binding to it and preventing the release of the caspase activator, CYC1, from the mitochondrial membrane. Also acts as a regulator of G2 checkpoint and progression to cytokinesis during mitosis. Regulates presynaptic plasticity, including neurotransmitter release and recovery, number of axonal mitochondria as well as size and number of synaptic vesicle clusters. During synaptic stimulation, increases ATP availab [...] (233 aa)
A0A286ZTM7_PIGHistone H3; Belongs to the histone H3 family. (136 aa)
SOX8SRY-box transcription factor 8. (460 aa)
ADGRG1Adhesion G protein-coupled receptor G1; Belongs to the G-protein coupled receptor 2 family. (740 aa)
SIX4Homeobox domain-containing protein. (785 aa)
RARARetinoic acid receptor alpha isoform X1. (462 aa)
ADAM20ADAM metallopeptidase domain 20. (737 aa)
WNT5AProtein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (380 aa)
SCAPERS phase cyclin A-associated protein in the endoplasmic reticulum isoform X1. (1408 aa)
H3F3AH3 histone, family 3A. (136 aa)
ZFP42ZFP42 zinc finger protein. (294 aa)
TBC1D20TBC1 domain family member 20 isoform X1. (403 aa)
PLEKHA1Pleckstrin homology domain-containing family A member 1 isoform X3. (402 aa)
GATA3Trans-acting T-cell-specific transcription factor GATA-3. (444 aa)
COL9A3Collagen type IX alpha 3 chain. (684 aa)
LOC110258839Pep_M12B_propep domain-containing protein. (248 aa)
A0A287AE08_PIGUncharacterized protein. (847 aa)
LHX9LIM homeobox 9. (397 aa)
A0A287AJR1_PIGUncharacterized protein. (737 aa)
RENRenin preproprotein; Belongs to the peptidase A1 family. (407 aa)
BRIP1BRCA1 interacting protein C-terminal helicase 1. (978 aa)
NR5A1Steroidogenic factor 1; Transcriptional activator. Seems to be essential for sexual differentiation and formation of the primary steroidogenic tissues. Binds to the Ad4 site found in the promoter region of steroidogenic P450 genes such as CYP11A, CYP11B and CYP21B. Also regulates the AMH/Muellerian inhibiting substance gene as well as the AHCH and STAR genes. 5'-YCAAGGYC-3' and 5'-RRAGGTCA-3' are the consensus sequences for the recognition by NR5A1. The SFPQ-NONO-NR5A1 complex binds to the CYP17 promoter and regulates basal and cAMP-dependent transcriptional activity. Binds phosphatidy [...] (461 aa)
SPATA2Spermatogenesis-associated protein 2. (520 aa)
RUSC1RUN and SH3 domain-containing protein 1 isoform X1. (1042 aa)
PDGFRAPlatelet-derived growth factor receptor alpha; Tyrosine-protein kinase that acts as a cell-surface receptor for PDGFA, PDGFB and PDGFC and plays an essential role in the regulation of embryonic development, cell proliferation, survival and chemotaxis. Depending on the context, promotes or inhibits cell proliferation and cell migration. Plays an important role in the differentiation of bone marrow-derived mesenchymal stem cells. Required for normal skeleton development. (1088 aa)
LRP2Low-density lipoprotein receptor-related protein 2; Multiligand endocytic receptor (By similarity). Acts together with CUBN to mediate endocytosis of high-density lipoproteins (By similarity). Mediates receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B (By similarity). In the kidney, mediates the tubular uptake and clearance of leptin (By similarity). Also mediates transport of leptin across the blood-brain barrier through endocytosis at the choroid plexus epithelium (By similarity). Endocytosis of leptin in neuronal cells is required for hyp [...] (4626 aa)
SCXBasic helix-loop-helix transcription factor scleraxis. (310 aa)
INHBAInhibin beta A chain; Inhibins and activins inhibit and activate, respectively, the secretion of follitropin by the pituitary gland. Inhibins/activins are involved in regulating a number of diverse functions such as hypothalamic and pituitary hormone secretion, gonadal hormone secretion, germ cell development and maturation, erythroid differentiation, insulin secretion, nerve cell survival, embryonic axial development or bone growth, depending on their subunit composition. Inhibins appear to oppose the functions of activins. (424 aa)
TCF21Transcription factor 21. (179 aa)
PATZ1POZ/BTB and AT hook containing zinc finger 1. (581 aa)
KLHL10Kelch like family member 10. (608 aa)
SGPL1Sphingosine-1-phosphate lyase 1. (609 aa)
NKX2-1NK2 homeobox 1. (399 aa)
AGO4Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs. (878 aa)
ATN1Atrophin-1. (1182 aa)
A0A287BJG7_PIGUncharacterized protein. (739 aa)
NKX3-1Homeobox protein Nkx-3.1 isoform 1. (247 aa)
A0A287BNZ6_PIGUncharacterized protein. (623 aa)
AMHMuellerian-inhibiting factor; This glycoprotein, produced by the Sertoli cells of the testis, causes regression of the Muellerian duct. It is also able to inhibit the growth of tumors derived from tissues of Muellerian duct origin (By similarity). (577 aa)
LOC110258345Uncharacterized protein. (718 aa)
FGF9Fibroblast growth factor 9; Plays an important role in the regulation of embryonic development, cell proliferation, cell differentiation and cell migration. May have a role in glial cell growth and differentiation during development, gliosis during repair and regeneration of brain tissue after damage, differentiation and survival of neuronal cells, and growth stimulation of glial tumors (By similarity). (228 aa)
PRDX4Peroxiredoxin 4. (276 aa)
SAFB2Scaffold attachment factor B2. (976 aa)
KITMast/stem cell growth factor receptor Kit; Tyrosine-protein kinase that acts as cell-surface receptor for the cytokine KITLG/SCF and plays an essential role in the regulation of cell survival and proliferation, hematopoiesis, stem cell maintenance, gametogenesis, mast cell development, migration and function, and in melanogenesis. In response to KITLG/SCF binding, KIT can activate several signaling pathways. Phosphorylates PIK3R1, PLCG1, SH2B2/APS and CBL. Activates the AKT1 signaling pathway by phosphorylation of PIK3R1, the regulatory subunit of phosphatidylinositol 3-kinase. Activat [...] (975 aa)
DMRT1Doublesex- and mab-3-related transcription factor 1; Transcription factor that plays a key role in male sex determination and differentiation by controlling testis development and male germ cell proliferation. Plays a central role in spermatogonia by inhibiting meiosis in undifferentiated spermatogonia and promoting mitosis, leading to spermatogonial development and allowing abundant and continuous production of sperm. Acts both as a transcription repressor and activator: prevents meiosis by restricting retinoic acid (RA)-dependent transcription and repressing STRA8 expression and prom [...] (375 aa)
WDR48WD repeat domain 48. (740 aa)
A0A5G2RK49_PIGUncharacterized protein. (296 aa)
ARID5BAT-rich interaction domain 5B. (1194 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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