(27 nodes) snRNA processing network (Sus scrofa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EXOSC6	Exosome component 6. (272 aa)
	USB1	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA 3' end-terminated with a 2',3'-cyclic phosphate; Belongs to the 2H phosphoesterase superfamily. USB1 family. (267 aa)
	EXOSC5	Exosome component 5. (299 aa)
	TOE1	Target of EGR1, exonuclease. (509 aa)
	EXOSC3	Exosome complex component RRP40 isoform 1. (275 aa)
	EXOSC4	Exosome complex component RRP41. (245 aa)
	INTS8	Integrator complex subunit 8. (958 aa)
	INTS3	Integrator complex subunit 3. (1040 aa)
	INTS1	Integrator complex subunit 1. (2191 aa)
	EXOSC7	Uncharacterized protein. (349 aa)
	TUT1	RRM domain-containing protein. (871 aa)
	INTS4	Uncharacterized protein. (965 aa)
	INTS2	Integrator complex subunit 2. (1202 aa)
	I3L9K8_PIG	Uncharacterized protein. (131 aa)
	INTS5	Integrator complex subunit 5. (1018 aa)
	INTS12	Integrator complex subunit 12. (462 aa)
	INTS6L	Integrator complex subunit 6 like. (898 aa)
	INTS6	Integrator complex subunit 6. (1045 aa)
	EXOSC9	Exosome component 9. (455 aa)
	A0A287AR38_PIG	Uncharacterized protein. (181 aa)
	INTS11	Integrator complex subunit 11. (705 aa)
	INTS7	Integrator complex subunit 7 isoform X1. (962 aa)
	INTS14	Von Willebrand factor A domain-containing protein 9 isoform X1. (518 aa)
	INTS9	Integrator complex subunit 9. (651 aa)
	INTS10	Uncharacterized protein. (736 aa)
	EXOSC8	Exosome component 8. (281 aa)
	EXOSC2	Exosome component 2. (271 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A287AR38_PIG	I3L9K8_PIG	ENSSSCP00000046526	ENSSSCP00000020721	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A287AR38_PIG	INTS1	ENSSSCP00000046526	ENSSSCP00000008071	Uncharacterized protein.	Integrator complex subunit 1.	0.940
A0A287AR38_PIG	INTS10	ENSSSCP00000046526	ENSSSCP00000059346	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A287AR38_PIG	INTS11	ENSSSCP00000046526	ENSSSCP00000050317	Uncharacterized protein.	Integrator complex subunit 11.	0.764
A0A287AR38_PIG	INTS12	ENSSSCP00000046526	ENSSSCP00000027269	Uncharacterized protein.	Integrator complex subunit 12.	0.831
A0A287AR38_PIG	INTS14	ENSSSCP00000046526	ENSSSCP00000056640	Uncharacterized protein.	Von Willebrand factor A domain-containing protein 9 isoform X1.	0.846
A0A287AR38_PIG	INTS2	ENSSSCP00000046526	ENSSSCP00000018727	Uncharacterized protein.	Integrator complex subunit 2.	0.728
A0A287AR38_PIG	INTS3	ENSSSCP00000046526	ENSSSCP00000007005	Uncharacterized protein.	Integrator complex subunit 3.	0.918
A0A287AR38_PIG	INTS4	ENSSSCP00000046526	ENSSSCP00000015804	Uncharacterized protein.	Uncharacterized protein.	0.771
A0A287AR38_PIG	INTS5	ENSSSCP00000046526	ENSSSCP00000025294	Uncharacterized protein.	Integrator complex subunit 5.	0.940
A0A287AR38_PIG	INTS6	ENSSSCP00000046526	ENSSSCP00000031423	Uncharacterized protein.	Integrator complex subunit 6.	0.945
A0A287AR38_PIG	INTS6L	ENSSSCP00000046526	ENSSSCP00000030451	Uncharacterized protein.	Integrator complex subunit 6 like.	0.807
A0A287AR38_PIG	INTS7	ENSSSCP00000046526	ENSSSCP00000054008	Uncharacterized protein.	Integrator complex subunit 7 isoform X1.	0.833
A0A287AR38_PIG	INTS8	ENSSSCP00000046526	ENSSSCP00000006507	Uncharacterized protein.	Integrator complex subunit 8.	0.826
A0A287AR38_PIG	INTS9	ENSSSCP00000046526	ENSSSCP00000058884	Uncharacterized protein.	Integrator complex subunit 9.	0.816
EXOSC2	EXOSC3	ENSSSCP00000071461	ENSSSCP00000005748	Exosome component 2.	Exosome complex component RRP40 isoform 1.	0.996
EXOSC2	EXOSC4	ENSSSCP00000071461	ENSSSCP00000006334	Exosome component 2.	Exosome complex component RRP41.	0.997
EXOSC2	EXOSC5	ENSSSCP00000071461	ENSSSCP00000003265	Exosome component 2.	Exosome component 5.	0.992
EXOSC2	EXOSC6	ENSSSCP00000071461	ENSSSCP00000002934	Exosome component 2.	Exosome component 6.	0.993
EXOSC2	EXOSC7	ENSSSCP00000071461	ENSSSCP00000012048	Exosome component 2.	Uncharacterized protein.	0.996