STRINGSTRING
NEDD4L NEDD4L N6AMT1 N6AMT1 SYT1 SYT1 ARMC12 ARMC12 SRF SRF CIB1 CIB1 ISLR ISLR MEGF8 MEGF8 SYT3 SYT3 LPAR3 LPAR3 SMAD7 SMAD7 INO80 INO80 TRIM32 TRIM32 EXOSC4 EXOSC4 CRABP2 CRABP2 BRAT1 BRAT1 SFRP2 SFRP2 KDM2B KDM2B RASAL1 RASAL1 KLHL22 KLHL22 SUPV3L1 SUPV3L1 LGI1 LGI1 SHTN1 SHTN1 SYT2 SYT2 TWF2 TWF2 DSCAM DSCAM DDX3X DDX3X F2 F2 HDGFL2 HDGFL2 CDKN2AIP CDKN2AIP DBNL DBNL SPHK1 SPHK1 LOC100521680 LOC100521680 ERBB2 ERBB2 POU4F2 POU4F2 SLC44A4 SLC44A4 NOL12 NOL12 LIMK1 LIMK1 EXOSC2 EXOSC2 HPN HPN BMPR2 BMPR2 PLAA PLAA SMURF1 SMURF1 FXN FXN EGFR EGFR MFSD2A MFSD2A ADAM10 ADAM10 GOLGA4 GOLGA4 NTN1 NTN1 CSNK2A1 CSNK2A1 NCBP1 NCBP1 USP47 USP47 RIMS1 RIMS1 PRKN PRKN ADNP2 ADNP2 PSMD10 PSMD10 A0A287BNW8_PIG A0A287BNW8_PIG ZNF639 ZNF639 SLC25A33 SLC25A33 ZFYVE27 ZFYVE27 NGF NGF TEAD1 TEAD1 HYAL1 HYAL1 IST1 IST1 CXCL16 CXCL16 EIF4G1 EIF4G1 TAF9B TAF9B SYT17 SYT17 RUSC1 RUSC1 WNT3 WNT3 CDKL5 CDKL5 BDNF BDNF MAP3K13 MAP3K13 CPNE5 CPNE5 UNC13A UNC13A FGFR1OP FGFR1OP EDN1 EDN1 COMMD5 COMMD5 TRPV2 TRPV2 SYT4 SYT4 ISLR2 ISLR2 TGFB2 TGFB2 EFNA5 EFNA5 RPTOR RPTOR MTPN MTPN EXOSC9 EXOSC9 YAP1 YAP1 DERL2 DERL2 TGFBR1 TGFBR1 SEMA4D SEMA4D SFRP1 SFRP1 DDX49 DDX49 MUL1 MUL1 CDH4 CDH4 MMP14 MMP14 SEMA7A SEMA7A WNT3A WNT3A
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
NEDD4LNEDD4 like E3 ubiquitin protein ligase. (1265 aa)
N6AMT1N-6 adenine-specific DNA methyltransferase 1. (220 aa)
SYT1Synaptotagmin 1. (379 aa)
ARMC12Armadillo repeat containing 12. (363 aa)
SRFSerum response factor. (512 aa)
CIB1Calcium and integrin-binding protein 1 isoform b. (191 aa)
ISLRImmunoglobulin superfamily containing leucine rich repeat. (436 aa)
MEGF8Multiple EGF like domains 8. (2789 aa)
SYT3Synaptotagmin-3 isoform X1. (591 aa)
LPAR3Lysophosphatidic acid receptor 3 isoform X1; Belongs to the G-protein coupled receptor 1 family. (354 aa)
SMAD7Mothers against decapentaplegic homolog. (426 aa)
INO80INO80 complex ATPase subunit. (1566 aa)
TRIM32Tripartite motif containing 32. (652 aa)
EXOSC4Exosome complex component RRP41. (245 aa)
CRABP2FABP domain-containing protein; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (138 aa)
BRAT1BRCA1-associated ATM activator 1 isoform 2. (822 aa)
SFRP2Uncharacterized protein. (294 aa)
KDM2BLysine demethylase 2B. (1312 aa)
RASAL1RAS protein activator like 1. (784 aa)
KLHL22Kelch like family member 22. (634 aa)
SUPV3L1Suv3 like RNA helicase. (788 aa)
LGI1Leucine rich glioma inactivated 1. (641 aa)
SHTN1Shootin 1. (631 aa)
SYT2Synaptotagmin 2. (417 aa)
TWF2Twinfilin actin binding protein 2. (500 aa)
DSCAMDS cell adhesion molecule. (2008 aa)
DDX3XATP-dependent RNA helicase DDX3X isoform 1; Belongs to the DEAD box helicase family. (662 aa)
F2Activation peptide fragment 1; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing (By similarity). (623 aa)
HDGFL2HDGF like 2. (667 aa)
CDKN2AIPCDKN2A-interacting protein isoform X1. (583 aa)
DBNLDrebrin like. (429 aa)
SPHK1Sphingosine kinase 1 isoform 2. (481 aa)
LOC100521680Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] (136 aa)
ERBB2Receptor protein-tyrosine kinase. (1255 aa)
POU4F2POU domain protein. (408 aa)
SLC44A4Choline transporter-like protein 4; Choline transporter that plays a role in the choline- acetylcholine system and is required to the efferent innervation of hair cells in the olivocochlear bundle for the maintenance of physiological function of outer hair cells and the protection of hair cells from acoustic injury (By similarity). Also described as a thiamine pyrophosphate transporter in colon, may mediate the absorption of microbiota-generated thiamine pyrophosphate and contribute to host thiamine (vitamin B1) homeostasis (By similarity). (715 aa)
NOL12Uncharacterized protein. (309 aa)
LIMK1LIM domain kinase 1. (681 aa)
EXOSC2Exosome component 2. (271 aa)
HPNHepsin; Belongs to the peptidase S1 family. (449 aa)
BMPR2Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (1085 aa)
PLAAPhospholipase A2 activating protein. (1044 aa)
SMURF1E3 ubiquitin-protein ligase. (859 aa)
FXNFrataxin. (264 aa)
EGFRReceptor protein-tyrosine kinase. (1205 aa)
MFSD2AMajor facilitator superfamily domain containing 2A. (541 aa)
ADAM10Disintegrin and metalloproteinase domain-containing protein 10; Cleaves the membrane-bound precursor of TNF-alpha to its mature soluble form. Responsible for the proteolytical release of soluble JAM3 from endothelial cells surface. Responsible for the proteolytic release of several other cell-surface proteins, including heparin-binding epidermal growth-like factor, ephrin-A2, CD44, CDH2 and for constitutive and regulated alpha-secretase cleavage of amyloid precursor protein (APP). Contributes to the normal cleavage of the cellular prion protein. Involved in the cleavage of the adhesion [...] (748 aa)
GOLGA4Golgin A4. (2241 aa)
NTN1Netrin-1; Netrins control guidance of CNS commissural axons and peripheral motor axons. Its association with either DCC or some UNC5 receptors will lead to axon attraction or repulsion, respectively. Binding to UNC5C might cause dissociation of UNC5C from polymerized TUBB3 in microtubules and thereby lead to increased microtubule dynamics and axon repulsion (By similarity). Involved in dorsal root ganglion axon projection towards the spinal cord (By similarity). It also serves as a survival factor via its association with its receptors which prevent the initiation of apoptosis. Involve [...] (651 aa)
CSNK2A1Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (398 aa)
NCBP1Nuclear cap binding protein subunit 1. (1117 aa)
USP47Ubiquitin specific peptidase 47; Belongs to the peptidase C19 family. (1356 aa)
RIMS1Regulating synaptic membrane exocytosis 1. (1684 aa)
PRKNE3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (461 aa)
ADNP2ADNP homeobox 2. (1197 aa)
PSMD10Proteasome 26S subunit, non-ATPase 10. (226 aa)
A0A287BNW8_PIGUncharacterized protein. (99 aa)
ZNF639Zinc finger protein 639. (485 aa)
SLC25A33Solute carrier family 25 member 33; Belongs to the mitochondrial carrier (TC 2.A.29) family. (321 aa)
ZFYVE27Zinc finger FYVE-type containing 27. (404 aa)
NGFBeta-nerve growth factor; Nerve growth factor is important for the development and maintenance of the sympathetic and sensory nervous systems. Extracellular ligand for the NTRK1 and NGFR receptors, activates cellular signaling cascades to regulate neuronal proliferation, differentiation and survival (By similarity). The immature NGF precursor (proNGF) functions as ligand for the heterodimeric receptor formed by SORCS2 and NGFR, and activates cellular signaling cascades that lead to inactivation of RAC1 and/or RAC2, reorganization of the actin cytoskeleton and neuronal growth cone colla [...] (385 aa)
TEAD1TEA domain transcription factor 1. (630 aa)
HYAL1Hyaluronidase-1; May have a role in promoting tumor progression. May block the TGFB1-enhanced cell growth (By similarity); Belongs to the glycosyl hydrolase 56 family. (650 aa)
IST1IST1 factor associated with ESCRT-III. (401 aa)
CXCL16C-X-C motif chemokine 16; Induces a strong chemotactic response. Induces calcium mobilization. Binds to CXCR6/Bonzo. Also acts as a scavenger receptor on macrophages, which specifically binds to OxLDL (oxidized low density lipoprotein), suggesting that it may be involved in pathophysiology such as atherogenesis (By similarity). (342 aa)
EIF4G1Eukaryotic translation initiation factor 4 gamma 1. (1613 aa)
TAF9BTranscription initiation factor TFIID subunit 9B. (273 aa)
SYT17Synaptotagmin 17. (505 aa)
RUSC1RUN and SH3 domain-containing protein 1 isoform X1. (1042 aa)
WNT3Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (453 aa)
CDKL5Cyclin dependent kinase like 5. (999 aa)
BDNFBrain-derived neurotrophic factor; Important signaling molecule that activates signaling cascades downstream of NTRK2 (By similarity). During development, promotes the survival and differentiation of selected neuronal populations of the peripheral and central nervous systems. Participates in axonal growth, pathfinding and in the modulation of dendritic growth and morphology. Major regulator of synaptic transmission and plasticity at adult synapses in many regions of the CNS. The versatility of BDNF is emphasized by its contribution to a range of adaptive neuronal responses including lo [...] (260 aa)
MAP3K13Mitogen-activated protein kinase kinase kinase 13; Activates the JUN N-terminal pathway through activation of the MAP kinase kinase MAP2K7. (967 aa)
CPNE5Copine 5. (610 aa)
UNC13AUncharacterized protein. (1581 aa)
FGFR1OPFGFR1 oncogene partner. (399 aa)
EDN1Big endothelin-1; Endothelins are endothelium-derived vasoconstrictor peptides. Probable ligand for G-protein coupled receptors EDNRA and EDNRB which activates PTK2B, BCAR1, BCAR3 and, GTPases RAP1 and RHOA cascade in glomerular mesangial cells (By similarity). Belongs to the endothelin/sarafotoxin family. (203 aa)
COMMD5COMM domain containing 5. (260 aa)
TRPV2Transient receptor potential cation channel subfamily V member 2; Belongs to the transient receptor (TC 1.A.4) family. (854 aa)
SYT4Synaptotagmin 4. (425 aa)
ISLR2Immunoglobulin superfamily containing leucine rich repeat 2. (806 aa)
TGFB2Transforming growth factor beta-2 proprotein; Transforming growth factor beta-2 proprotein: Precursor of the Latency-associated peptide (LAP) and Transforming growth factor beta-2 (TGF-beta-2) chains, which constitute the regulatory and active subunit of TGF-beta-2, respectively. Transforming growth factor beta-2: Multifunctional protein that regulates various processes such as angiogenesis and heart development (By similarity). Activation into mature form follows different steps: following cleavage of the proprotein in the Golgi apparatus, Latency-associated peptide (LAP) and Transfor [...] (443 aa)
EFNA5Ephrin A5; Belongs to the ephrin family. (228 aa)
RPTORRegulatory associated protein of MTOR complex 1. (1351 aa)
MTPNMyotrophin. (136 aa)
EXOSC9Exosome component 9. (455 aa)
YAP1Yes associated protein 1. (432 aa)
DERL2Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. (239 aa)
TGFBR1TGF-beta receptor type-1; Transmembrane serine/threonine kinase forming with the TGF- beta type II serine/threonine kinase receptor, TGFBR2, the non- promiscuous receptor for the TGF-beta cytokines TGFB1, TGFB2 and TGFB3. Transduces the TGFB1, TGFB2 and TGFB3 signal from the cell surface to the cytoplasm and is thus regulating a plethora of physiological and pathological processes including cell cycle arrest in epithelial and hematopoietic cells, control of mesenchymal cell proliferation and differentiation, wound healing, extracellular matrix production, immunosuppression and carcinog [...] (560 aa)
SEMA4DSemaphorin-4D isoform X1; Belongs to the semaphorin family. (865 aa)
SFRP1Secreted frizzled-related protein 1. (308 aa)
DDX49DEAD-box helicase 49; Belongs to the DEAD box helicase family. (476 aa)
MUL1Mitochondrial E3 ubiquitin protein ligase 1. (305 aa)
CDH4Cadherin 4; Cadherins are calcium-dependent cell adhesion proteins. (914 aa)
MMP14Matrix metalloproteinase-14; Endopeptidase that degrades various components of the extracellular matrix, such as collagen. Activates progelatinase A. Essential for pericellular collagenolysis and modeling of skeletal and extraskeletal connective tissues during development. May be involved in actin cytoskeleton reorganization by cleaving PTK7. Acts as a positive regulator of cell growth and migration via activation of MMP15 in association with pro-MMP2. Involved in the formation of the fibrovascular tissues in association with pro-MMP2. Cleaves ADGRB1 to release vasculostatin-40 which i [...] (606 aa)
SEMA7ASemaphorin 7A (John Milton Hagen blood group); Belongs to the semaphorin family. (615 aa)
WNT3AProtein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (353 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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