36 items (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NOP56	NOP56 ribonucleoprotein. (596 aa)
	HEATR1	HEAT repeat containing 1. (2141 aa)
	DDX21	DEAD (Asp-Glu-Ala-Asp) box helicase 21. (784 aa)
	FAM155B	Family with sequence similarity 155 member B. (470 aa)
	DKC1	Uncharacterized protein. (521 aa)
	A0A287AJR4_PIG	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	UTP25	UTP25 small subunit processor component. (760 aa)
	NUDT16	Nudix hydrolase 16. (211 aa)
	NUDT1	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family. (277 aa)
	A0A286ZLE8_PIG	Ribosomal_L7Ae domain-containing protein. (74 aa)
	FAM155A	Family with sequence similarity 155 member A. (455 aa)
	TSR1	TSR1 ribosome maturation factor. (763 aa)
	DHX37	DEAH-box helicase 37. (1186 aa)
	NUDT7	Nudix hydrolase 7. (237 aa)
	UBE4A	U-box domain-containing protein. (1074 aa)
	XRCC5	X-ray repair cross complementing 5. (1011 aa)
	NUDT16L1	Nudix hydrolase 16 like 1. (212 aa)
	NUDT5	Nudix hydrolase 5; Belongs to the Nudix hydrolase family. (270 aa)
	NHP2	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (178 aa)
	TBL3	Transducin beta like 3. (889 aa)
	A0A287B0N5_PIG	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (123 aa)
	NOP10	NOP10 ribonucleoprotein. (64 aa)
	NUDT4	Nudix hydrolase domain-containing protein. (180 aa)
	NUFIP1	Nuclear fragile X mental retardation-interacting protein 1. (494 aa)
	UTP6	UTP6 small subunit processome component. (598 aa)
	IMP4	U3 small nucleolar ribonucleoprotein IMP4 isoform a. (291 aa)
	ISG20	Interferon stimulated exonuclease gene 20. (189 aa)
	NOP58	NOP58 ribonucleoprotein. (546 aa)
	BYSL	Uncharacterized protein. (435 aa)
	BMS1	BMS1 ribosome biogenesis factor. (1284 aa)
	RRP9	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (475 aa)
	GAR1	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (210 aa)
	SNU13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (132 aa)
	IMP3	S4 RNA-binding domain-containing protein. (184 aa)
	PRKDC	Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (4136 aa)
	WDR3	WD repeat domain 3. (943 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A286ZLE8_PIG	A0A287AJR4_PIG	ENSSSCP00000032290	ENSSSCP00000044137	Ribosomal_L7Ae domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.545
A0A286ZLE8_PIG	A0A287B0N5_PIG	ENSSSCP00000032290	ENSSSCP00000049721	Ribosomal_L7Ae domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.855
A0A286ZLE8_PIG	BMS1	ENSSSCP00000032290	ENSSSCP00000025609	Ribosomal_L7Ae domain-containing protein.	BMS1 ribosome biogenesis factor.	0.785
A0A286ZLE8_PIG	BYSL	ENSSSCP00000032290	ENSSSCP00000023383	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein.	0.753
A0A286ZLE8_PIG	DHX37	ENSSSCP00000032290	ENSSSCP00000070027	Ribosomal_L7Ae domain-containing protein.	DEAH-box helicase 37.	0.442
A0A286ZLE8_PIG	DKC1	ENSSSCP00000032290	ENSSSCP00000013633	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein.	0.894
A0A286ZLE8_PIG	GAR1	ENSSSCP00000032290	ENSSSCP00000028209	Ribosomal_L7Ae domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.872
A0A286ZLE8_PIG	HEATR1	ENSSSCP00000032290	ENSSSCP00000010819	Ribosomal_L7Ae domain-containing protein.	HEAT repeat containing 1.	0.914
A0A286ZLE8_PIG	IMP3	ENSSSCP00000032290	ENSSSCP00000002051	Ribosomal_L7Ae domain-containing protein.	S4 RNA-binding domain-containing protein.	0.814
A0A286ZLE8_PIG	IMP4	ENSSSCP00000032290	ENSSSCP00000016674	Ribosomal_L7Ae domain-containing protein.	U3 small nucleolar ribonucleoprotein IMP4 isoform a.	0.902
A0A286ZLE8_PIG	NHP2	ENSSSCP00000032290	ENSSSCP00000057380	Ribosomal_L7Ae domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.855
A0A286ZLE8_PIG	NOP10	ENSSSCP00000032290	ENSSSCP00000051732	Ribosomal_L7Ae domain-containing protein.	NOP10 ribonucleoprotein.	0.920
A0A286ZLE8_PIG	NOP56	ENSSSCP00000032290	ENSSSCP00000007637	Ribosomal_L7Ae domain-containing protein.	NOP56 ribonucleoprotein.	0.984
A0A286ZLE8_PIG	NOP58	ENSSSCP00000032290	ENSSSCP00000022063	Ribosomal_L7Ae domain-containing protein.	NOP58 ribonucleoprotein.	0.967
A0A286ZLE8_PIG	NUFIP1	ENSSSCP00000032290	ENSSSCP00000040528	Ribosomal_L7Ae domain-containing protein.	Nuclear fragile X mental retardation-interacting protein 1.	0.456
A0A286ZLE8_PIG	RRP9	ENSSSCP00000032290	ENSSSCP00000026458	Ribosomal_L7Ae domain-containing protein.	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.	0.937
A0A286ZLE8_PIG	SNU13	ENSSSCP00000032290	ENSSSCP00000000064	Ribosomal_L7Ae domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.544
A0A286ZLE8_PIG	TBL3	ENSSSCP00000032290	ENSSSCP00000053073	Ribosomal_L7Ae domain-containing protein.	Transducin beta like 3.	0.886
A0A286ZLE8_PIG	TSR1	ENSSSCP00000032290	ENSSSCP00000052694	Ribosomal_L7Ae domain-containing protein.	TSR1 ribosome maturation factor.	0.417
A0A286ZLE8_PIG	UTP25	ENSSSCP00000032290	ENSSSCP00000016551	Ribosomal_L7Ae domain-containing protein.	UTP25 small subunit processor component.	0.712