(14 nodes) Preribosome, small subunit precursor network (Sus scrofa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NOB1	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (413 aa)
	LTV1	LTV1 ribosome biogenesis factor. (475 aa)
	TSR1	TSR1 ribosome maturation factor. (763 aa)
	RIOK2	RIO domain-containing protein. (190 aa)
	RIOK3	Serine/threonine-protein kinase RIO3; Involved in regulation of type I interferon (IFN)-dependent immune response which plays a critical role in the innate immune response against DNA and RNA viruses. (519 aa)
	RRP1	Ribosomal RNA processing protein 1 homolog A. (447 aa)
	RIOK1	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (565 aa)
	FAM207A	Uncharacterized protein. (266 aa)
	BYSL	Uncharacterized protein. (435 aa)
	RRP1B	Ribosomal RNA processing 1B. (739 aa)
	FTSJ3	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (836 aa)
	NOC4L	Nucleolar complex associated 4 homolog. (543 aa)
	NOP14	NOP14 nucleolar protein. (852 aa)
	NOP9	NOP9 nucleolar protein. (637 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BYSL	FAM207A	ENSSSCP00000023383	ENSSSCP00000031323	Uncharacterized protein.	Uncharacterized protein.	0.753
BYSL	FTSJ3	ENSSSCP00000023383	ENSSSCP00000018316	Uncharacterized protein.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.896
BYSL	LTV1	ENSSSCP00000023383	ENSSSCP00000054964	Uncharacterized protein.	LTV1 ribosome biogenesis factor.	0.997
BYSL	NOB1	ENSSSCP00000023383	ENSSSCP00000002971	Uncharacterized protein.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.997
BYSL	NOC4L	ENSSSCP00000023383	ENSSSCP00000010401	Uncharacterized protein.	Nucleolar complex associated 4 homolog.	0.993
BYSL	NOP14	ENSSSCP00000023383	ENSSSCP00000009267	Uncharacterized protein.	NOP14 nucleolar protein.	0.996
BYSL	NOP9	ENSSSCP00000023383	ENSSSCP00000002176	Uncharacterized protein.	NOP9 nucleolar protein.	0.917
BYSL	RIOK1	ENSSSCP00000023383	ENSSSCP00000040815	Uncharacterized protein.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.702
BYSL	RIOK2	ENSSSCP00000023383	ENSSSCP00000052390	Uncharacterized protein.	RIO domain-containing protein.	0.983
BYSL	RIOK3	ENSSSCP00000023383	ENSSSCP00000050554	Uncharacterized protein.	Serine/threonine-protein kinase RIO3; Involved in regulation of type I interferon (IFN)-dependent immune response which plays a critical role in the innate immune response against DNA and RNA viruses.	0.545
BYSL	RRP1	ENSSSCP00000023383	ENSSSCP00000045889	Uncharacterized protein.	Ribosomal RNA processing protein 1 homolog A.	0.659
BYSL	RRP1B	ENSSSCP00000023383	ENSSSCP00000019280	Uncharacterized protein.	Ribosomal RNA processing 1B.	0.666
BYSL	TSR1	ENSSSCP00000023383	ENSSSCP00000052694	Uncharacterized protein.	TSR1 ribosome maturation factor.	0.997
FAM207A	BYSL	ENSSSCP00000031323	ENSSSCP00000023383	Uncharacterized protein.	Uncharacterized protein.	0.753
FAM207A	LTV1	ENSSSCP00000031323	ENSSSCP00000054964	Uncharacterized protein.	LTV1 ribosome biogenesis factor.	0.722
FAM207A	NOB1	ENSSSCP00000031323	ENSSSCP00000002971	Uncharacterized protein.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.725
FAM207A	NOC4L	ENSSSCP00000031323	ENSSSCP00000010401	Uncharacterized protein.	Nucleolar complex associated 4 homolog.	0.493
FAM207A	NOP14	ENSSSCP00000031323	ENSSSCP00000009267	Uncharacterized protein.	NOP14 nucleolar protein.	0.497
FAM207A	RIOK2	ENSSSCP00000031323	ENSSSCP00000052390	Uncharacterized protein.	RIO domain-containing protein.	0.430
FAM207A	TSR1	ENSSSCP00000031323	ENSSSCP00000052694	Uncharacterized protein.	TSR1 ribosome maturation factor.	0.740