43 items (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PRKDC	Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (4136 aa)
	DCAF13	DDB1 and CUL4 associated factor 13. (444 aa)
	UTP14A	Uncharacterized protein. (773 aa)
	IMP3	S4 RNA-binding domain-containing protein. (184 aa)
	UTP20	UTP20 small subunit processome component. (2781 aa)
	SNU13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (132 aa)
	UBE4A	U-box domain-containing protein. (1074 aa)
	XRCC5	X-ray repair cross complementing 5. (1011 aa)
	WDR46	WD repeat-containing protein 46 isoform 1. (656 aa)
	KRR1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (375 aa)
	TBL3	Transducin beta like 3. (889 aa)
	NGDN	Uncharacterized protein. (328 aa)
	FCF1	FCF1 rRNA-processing protein. (198 aa)
	A0A287AJR4_PIG	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	UTP6	UTP6 small subunit processome component. (598 aa)
	RPS7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
	WDR36	WD repeat domain 36. (895 aa)
	NOL10	Nucleolar protein 10 isoform 1. (688 aa)
	A0A286ZLE8_PIG	Ribosomal_L7Ae domain-containing protein. (74 aa)
	RRP9	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (475 aa)
	UTP23	UTP23 small subunit processome component. (251 aa)
	EMG1	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1. (244 aa)
	HUNK	Hormonally up-regulated Neu-associated kinase. (714 aa)
	UTP3	Sas10 domain-containing protein. (474 aa)
	NOP58	NOP58 ribonucleoprotein. (546 aa)
	FBL	Fibrillarin. (321 aa)
	UTP18	U3 small nucleolar RNA-associated protein 18 homolog. (572 aa)
	FBLL1	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1. (332 aa)
	IMP4	U3 small nucleolar ribonucleoprotein IMP4 isoform a. (291 aa)
	UTP25	UTP25 small subunit processor component. (760 aa)
	NOL6	Nucleolar protein 6. (1145 aa)
	PDCD11	Programmed cell death 11. (1875 aa)
	HEATR1	HEAT repeat containing 1. (2141 aa)
	NOC4L	Nucleolar complex associated 4 homolog. (543 aa)
	NOP14	NOP14 nucleolar protein. (852 aa)
	NOP56	NOP56 ribonucleoprotein. (596 aa)
	WDR3	WD repeat domain 3. (943 aa)
	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (680 aa)
	UTP11	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (253 aa)
	F1SUY3_PIG	Uncharacterized protein. (308 aa)
	PWP2	Uncharacterized protein. (1096 aa)
	A0A5G2QWJ3_PIG	Uncharacterized protein. (267 aa)
	UTP4	U3 small nucleolar RNA-associated protein 4 homolog isoform 1. (686 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A286ZLE8_PIG	A0A287AJR4_PIG	ENSSSCP00000032290	ENSSSCP00000044137	Ribosomal_L7Ae domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.545
A0A286ZLE8_PIG	A0A5G2QWJ3_PIG	ENSSSCP00000032290	ENSSSCP00000066308	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein.	0.804
A0A286ZLE8_PIG	DCAF13	ENSSSCP00000032290	ENSSSCP00000006459	Ribosomal_L7Ae domain-containing protein.	DDB1 and CUL4 associated factor 13.	0.861
A0A286ZLE8_PIG	EMG1	ENSSSCP00000032290	ENSSSCP00000026081	Ribosomal_L7Ae domain-containing protein.	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	0.916
A0A286ZLE8_PIG	F1SUY3_PIG	ENSSSCP00000032290	ENSSSCP00000003742	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein.	0.825
A0A286ZLE8_PIG	FBL	ENSSSCP00000032290	ENSSSCP00000019383	Ribosomal_L7Ae domain-containing protein.	Fibrillarin.	0.906
A0A286ZLE8_PIG	FBLL1	ENSSSCP00000032290	ENSSSCP00000018025	Ribosomal_L7Ae domain-containing protein.	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1.	0.880
A0A286ZLE8_PIG	FCF1	ENSSSCP00000032290	ENSSSCP00000045943	Ribosomal_L7Ae domain-containing protein.	FCF1 rRNA-processing protein.	0.908
A0A286ZLE8_PIG	HEATR1	ENSSSCP00000032290	ENSSSCP00000010819	Ribosomal_L7Ae domain-containing protein.	HEAT repeat containing 1.	0.914
A0A286ZLE8_PIG	IMP3	ENSSSCP00000032290	ENSSSCP00000002051	Ribosomal_L7Ae domain-containing protein.	S4 RNA-binding domain-containing protein.	0.814
A0A286ZLE8_PIG	IMP4	ENSSSCP00000032290	ENSSSCP00000016674	Ribosomal_L7Ae domain-containing protein.	U3 small nucleolar ribonucleoprotein IMP4 isoform a.	0.902
A0A286ZLE8_PIG	KRR1	ENSSSCP00000032290	ENSSSCP00000054044	Ribosomal_L7Ae domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.909
A0A286ZLE8_PIG	MPHOSPH10	ENSSSCP00000032290	ENSSSCP00000005216	Ribosomal_L7Ae domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.885
A0A286ZLE8_PIG	NGDN	ENSSSCP00000032290	ENSSSCP00000046650	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein.	0.825
A0A286ZLE8_PIG	NOC4L	ENSSSCP00000032290	ENSSSCP00000010401	Ribosomal_L7Ae domain-containing protein.	Nucleolar complex associated 4 homolog.	0.881
A0A286ZLE8_PIG	NOL10	ENSSSCP00000032290	ENSSSCP00000033617	Ribosomal_L7Ae domain-containing protein.	Nucleolar protein 10 isoform 1.	0.876
A0A286ZLE8_PIG	NOL6	ENSSSCP00000032290	ENSSSCP00000011723	Ribosomal_L7Ae domain-containing protein.	Nucleolar protein 6.	0.879
A0A286ZLE8_PIG	NOP14	ENSSSCP00000032290	ENSSSCP00000009267	Ribosomal_L7Ae domain-containing protein.	NOP14 nucleolar protein.	0.865
A0A286ZLE8_PIG	NOP56	ENSSSCP00000032290	ENSSSCP00000007637	Ribosomal_L7Ae domain-containing protein.	NOP56 ribonucleoprotein.	0.984
A0A286ZLE8_PIG	NOP58	ENSSSCP00000032290	ENSSSCP00000022063	Ribosomal_L7Ae domain-containing protein.	NOP58 ribonucleoprotein.	0.967