(8 nodes) Amacrine cell differentiation network (Sus scrofa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HES1	Uncharacterized protein. (280 aa)
	NEUROD4	Neurogenic differentiation factor. (331 aa)
	LOC110258874	Fork-head domain-containing protein. (493 aa)
	PTF1A	Pancreas associated transcription factor 1a. (328 aa)
	NEUROD1	Neurogenic differentiation factor. (356 aa)
	FOXN4	Fork-head domain-containing protein. (517 aa)
	BARHL2	BarH like homeobox 2. (384 aa)
	GDF11	Growth/differentiation factor 11 preproprotein. (404 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BARHL2	FOXN4	ENSSSCP00000007371	ENSSSCP00000010603	BarH like homeobox 2.	Fork-head domain-containing protein.	0.608
BARHL2	LOC110258874	ENSSSCP00000007371	ENSSSCP00000036845	BarH like homeobox 2.	Fork-head domain-containing protein.	0.608
BARHL2	PTF1A	ENSSSCP00000007371	ENSSSCP00000025304	BarH like homeobox 2.	Pancreas associated transcription factor 1a.	0.809
FOXN4	BARHL2	ENSSSCP00000010603	ENSSSCP00000007371	Fork-head domain-containing protein.	BarH like homeobox 2.	0.608
FOXN4	PTF1A	ENSSSCP00000010603	ENSSSCP00000025304	Fork-head domain-containing protein.	Pancreas associated transcription factor 1a.	0.667
LOC110258874	BARHL2	ENSSSCP00000036845	ENSSSCP00000007371	Fork-head domain-containing protein.	BarH like homeobox 2.	0.608
LOC110258874	PTF1A	ENSSSCP00000036845	ENSSSCP00000025304	Fork-head domain-containing protein.	Pancreas associated transcription factor 1a.	0.667
PTF1A	BARHL2	ENSSSCP00000025304	ENSSSCP00000007371	Pancreas associated transcription factor 1a.	BarH like homeobox 2.	0.809
PTF1A	FOXN4	ENSSSCP00000025304	ENSSSCP00000010603	Pancreas associated transcription factor 1a.	Fork-head domain-containing protein.	0.667
PTF1A	LOC110258874	ENSSSCP00000025304	ENSSSCP00000036845	Pancreas associated transcription factor 1a.	Fork-head domain-containing protein.	0.667