19 items (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EXOSC7	Uncharacterized protein. (349 aa)
	EXOSC4	Exosome complex component RRP41. (245 aa)
	EXOSC3	Exosome complex component RRP40 isoform 1. (275 aa)
	EXOSC10	Exosome component 10. (869 aa)
	EXOSC5	Exosome component 5. (299 aa)
	EXOSC6	Exosome component 6. (272 aa)
	PARN	Poly(A)-specific ribonuclease. (715 aa)
	EXOSC2	Exosome component 2. (271 aa)
	A0A5G2QWJ3_PIG	Uncharacterized protein. (267 aa)
	EXOSC8	Exosome component 8. (281 aa)
	ERI2	ERI1 exoribonuclease family member 2. (686 aa)
	ERI1	3'-5' exoribonuclease 1 isoform X1. (349 aa)
	ERI3	ERI1 exoribonuclease family member 3. (317 aa)
	A0A287A5G4_PIG	Exonuclease domain-containing protein. (136 aa)
	EXOSC9	Exosome component 9. (455 aa)
	RPS21	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
	FBL	Fibrillarin. (321 aa)
	FBLL1	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1. (332 aa)
	DKC1	Uncharacterized protein. (521 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A5G2QWJ3_PIG	DKC1	ENSSSCP00000066308	ENSSSCP00000013633	Uncharacterized protein.	Uncharacterized protein.	0.917
A0A5G2QWJ3_PIG	EXOSC10	ENSSSCP00000066308	ENSSSCP00000003698	Uncharacterized protein.	Exosome component 10.	0.713
A0A5G2QWJ3_PIG	EXOSC2	ENSSSCP00000066308	ENSSSCP00000071461	Uncharacterized protein.	Exosome component 2.	0.434
A0A5G2QWJ3_PIG	EXOSC3	ENSSSCP00000066308	ENSSSCP00000005748	Uncharacterized protein.	Exosome complex component RRP40 isoform 1.	0.484
A0A5G2QWJ3_PIG	EXOSC4	ENSSSCP00000066308	ENSSSCP00000006334	Uncharacterized protein.	Exosome complex component RRP41.	0.472
A0A5G2QWJ3_PIG	EXOSC5	ENSSSCP00000066308	ENSSSCP00000003265	Uncharacterized protein.	Exosome component 5.	0.469
A0A5G2QWJ3_PIG	EXOSC7	ENSSSCP00000066308	ENSSSCP00000012048	Uncharacterized protein.	Uncharacterized protein.	0.447
A0A5G2QWJ3_PIG	EXOSC8	ENSSSCP00000066308	ENSSSCP00000060162	Uncharacterized protein.	Exosome component 8.	0.439
A0A5G2QWJ3_PIG	EXOSC9	ENSSSCP00000066308	ENSSSCP00000034219	Uncharacterized protein.	Exosome component 9.	0.434
DKC1	A0A5G2QWJ3_PIG	ENSSSCP00000013633	ENSSSCP00000066308	Uncharacterized protein.	Uncharacterized protein.	0.917
DKC1	FBL	ENSSSCP00000013633	ENSSSCP00000019383	Uncharacterized protein.	Fibrillarin.	0.964
DKC1	FBLL1	ENSSSCP00000013633	ENSSSCP00000018025	Uncharacterized protein.	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1.	0.960
DKC1	PARN	ENSSSCP00000013633	ENSSSCP00000073937	Uncharacterized protein.	Poly(A)-specific ribonuclease.	0.512
ERI1	ERI2	ENSSSCP00000043757	ENSSSCP00000045789	3'-5' exoribonuclease 1 isoform X1.	ERI1 exoribonuclease family member 2.	0.523
ERI1	EXOSC5	ENSSSCP00000043757	ENSSSCP00000003265	3'-5' exoribonuclease 1 isoform X1.	Exosome component 5.	0.483
ERI2	ERI1	ENSSSCP00000045789	ENSSSCP00000043757	ERI1 exoribonuclease family member 2.	3'-5' exoribonuclease 1 isoform X1.	0.523
EXOSC10	A0A5G2QWJ3_PIG	ENSSSCP00000003698	ENSSSCP00000066308	Exosome component 10.	Uncharacterized protein.	0.713
EXOSC10	EXOSC2	ENSSSCP00000003698	ENSSSCP00000071461	Exosome component 10.	Exosome component 2.	0.989
EXOSC10	EXOSC3	ENSSSCP00000003698	ENSSSCP00000005748	Exosome component 10.	Exosome complex component RRP40 isoform 1.	0.992
EXOSC10	EXOSC4	ENSSSCP00000003698	ENSSSCP00000006334	Exosome component 10.	Exosome complex component RRP41.	0.996