17 items (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LARP1	La ribonucleoprotein domain family member 1. (1101 aa)
	DDX3X	ATP-dependent RNA helicase DDX3X isoform 1; Belongs to the DEAD box helicase family. (662 aa)
	DNAJC3	Uncharacterized protein. (504 aa)
	METTL3	N6-adenosine-methyltransferase catalytic subunit; Belongs to the MT-A70-like family. (580 aa)
	NCK1	Cytoplasmic protein. (377 aa)
	DHX29	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1366 aa)
	KHDRBS1	KH RNA binding domain containing, signal transduction associated 1. (443 aa)
	YTHDF1	YTH N6-methyladenosine RNA binding protein 1. (652 aa)
	RPS6KB2	Non-specific serine/threonine protein kinase. (526 aa)
	HABP4	Intracellular hyaluronan-binding protein 4. (418 aa)
	YTHDF3	YTH domain-containing family protein 3 isoform b. (588 aa)
	YTHDF2	YTH N6-methyladenosine RNA binding protein 2. (600 aa)
	UHMK1	Serine/threonine-protein kinase Kist isoform 1. (419 aa)
	RPS6KB1	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (525 aa)
	POLR2G	RNA polymerase II subunit G. (231 aa)
	DAZL	Deleted in azoospermia-like protein. (295 aa)
	BOLL	Boule homolog, RNA binding protein. (430 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX3X	DHX29	ENSSSCP00000013038	ENSSSCP00000026225	ATP-dependent RNA helicase DDX3X isoform 1; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily.	0.670
DDX3X	LARP1	ENSSSCP00000013038	ENSSSCP00000018085	ATP-dependent RNA helicase DDX3X isoform 1; Belongs to the DEAD box helicase family.	La ribonucleoprotein domain family member 1.	0.409
DHX29	DDX3X	ENSSSCP00000026225	ENSSSCP00000013038	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily.	ATP-dependent RNA helicase DDX3X isoform 1; Belongs to the DEAD box helicase family.	0.670
LARP1	DDX3X	ENSSSCP00000018085	ENSSSCP00000013038	La ribonucleoprotein domain family member 1.	ATP-dependent RNA helicase DDX3X isoform 1; Belongs to the DEAD box helicase family.	0.409
METTL3	POLR2G	ENSSSCP00000023249	ENSSSCP00000069537	N6-adenosine-methyltransferase catalytic subunit; Belongs to the MT-A70-like family.	RNA polymerase II subunit G.	0.446
METTL3	YTHDF1	ENSSSCP00000023249	ENSSSCP00000031181	N6-adenosine-methyltransferase catalytic subunit; Belongs to the MT-A70-like family.	YTH N6-methyladenosine RNA binding protein 1.	0.854
METTL3	YTHDF2	ENSSSCP00000023249	ENSSSCP00000065604	N6-adenosine-methyltransferase catalytic subunit; Belongs to the MT-A70-like family.	YTH N6-methyladenosine RNA binding protein 2.	0.845
METTL3	YTHDF3	ENSSSCP00000023249	ENSSSCP00000048507	N6-adenosine-methyltransferase catalytic subunit; Belongs to the MT-A70-like family.	YTH domain-containing family protein 3 isoform b.	0.843
POLR2G	METTL3	ENSSSCP00000069537	ENSSSCP00000023249	RNA polymerase II subunit G.	N6-adenosine-methyltransferase catalytic subunit; Belongs to the MT-A70-like family.	0.446
RPS6KB1	RPS6KB2	ENSSSCP00000067410	ENSSSCP00000034327	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	Non-specific serine/threonine protein kinase.	0.920
RPS6KB2	RPS6KB1	ENSSSCP00000034327	ENSSSCP00000067410	Non-specific serine/threonine protein kinase.	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	0.920
YTHDF1	METTL3	ENSSSCP00000031181	ENSSSCP00000023249	YTH N6-methyladenosine RNA binding protein 1.	N6-adenosine-methyltransferase catalytic subunit; Belongs to the MT-A70-like family.	0.854
YTHDF1	YTHDF2	ENSSSCP00000031181	ENSSSCP00000065604	YTH N6-methyladenosine RNA binding protein 1.	YTH N6-methyladenosine RNA binding protein 2.	0.480
YTHDF2	METTL3	ENSSSCP00000065604	ENSSSCP00000023249	YTH N6-methyladenosine RNA binding protein 2.	N6-adenosine-methyltransferase catalytic subunit; Belongs to the MT-A70-like family.	0.845
YTHDF2	YTHDF1	ENSSSCP00000065604	ENSSSCP00000031181	YTH N6-methyladenosine RNA binding protein 2.	YTH N6-methyladenosine RNA binding protein 1.	0.480
YTHDF3	METTL3	ENSSSCP00000048507	ENSSSCP00000023249	YTH domain-containing family protein 3 isoform b.	N6-adenosine-methyltransferase catalytic subunit; Belongs to the MT-A70-like family.	0.843