STRINGSTRING
PLPPR4 PLPPR4 JAG1 JAG1 ATP6V1B1 ATP6V1B1 CYTL1 CYTL1 OTOP1 OTOP1 GRXCR1 GRXCR1 SEC24B SEC24B ATOH1 ATOH1 FREM2 FREM2 TBX3 TBX3 CDH23 CDH23 PDZD7 PDZD7 HMX2 HMX2 LRIG1 LRIG1 USH1C USH1C NEUROG1 NEUROG1 CXCL14 CXCL14 POU4F3 POU4F3 F1SUX2_PIG F1SUX2_PIG MYO7A MYO7A MAPKAPK2 MAPKAPK2 PJVK PJVK NEUROD1 NEUROD1 EPHA4 EPHA4 GBX2 GBX2 SHH SHH SLC44A4 SLC44A4 ALDH1A3 ALDH1A3 GRHL3 GRHL3 ENSSSCP00000073689 ENSSSCP00000073689 A0A5G2R4X1_PIG A0A5G2R4X1_PIG ATG5 ATG5 HPN HPN MCOLN3 MCOLN3 A0A5G2QZ07_PIG A0A5G2QZ07_PIG ENSSSCP00000069602 ENSSSCP00000069602 SPRY2 SPRY2 BMPER BMPER PTPRQ PTPRQ MYO6 MYO6 TSKU TSKU ADAM10 ADAM10 SLC9A3R1 SLC9A3R1 FGF8 FGF8 NTN1 NTN1 GABRB2 GABRB2 PTPN11 PTPN11 NAGLU NAGLU CCM2 CCM2 C1QB C1QB A0A5G2RF62_PIG A0A5G2RF62_PIG SLC4A7 SLC4A7 A0A5G2QET8_PIG A0A5G2QET8_PIG A0A5G2RMB4_PIG A0A5G2RMB4_PIG ATG4B ATG4B FGF9 FGF9 PCDH15 PCDH15 TMIE TMIE CELSR1 CELSR1 PHOX2B PHOX2B AHI1 AHI1 DLX6 DLX6 PLS1 PLS1 TTC8 TTC8 LGR5 LGR5 FGF2 FGF2 TIFAB TIFAB HES5 HES5 HMX3 HMX3 TFAP2A TFAP2A PROX1 PROX1 USH2A USH2A CLRN1 CLRN1 NOTCH1 NOTCH1 A0A287AZ68_PIG A0A287AZ68_PIG CECR2 CECR2 KCNQ1 KCNQ1 LRP10 LRP10 HES1 HES1 OTX1 OTX1 CDKN1B CDKN1B DLX5 DLX5 LRIG3 LRIG3 BCR BCR FRZB FRZB FGFR3 FGFR3 LIN7A LIN7A FZD2 FZD2 TCAP TCAP MCM2 MCM2 GATA3 GATA3 BLOC1S5 BLOC1S5 INSIG2 INSIG2 GSDME GSDME EYA1 EYA1 FOXG1 FOXG1 TRIP11 TRIP11 WNT5A WNT5A PRRX1 PRRX1 IFT88 IFT88 BMP2 BMP2 STOX1 STOX1 INSIG1 INSIG1 COL2A1 COL2A1 SIX4 SIX4 LHX3 LHX3 PAFAH1B1 PAFAH1B1 FZD3 FZD3 WHRN WHRN RPGRIP1L RPGRIP1L NBL1 NBL1 GRXCR2 GRXCR2 MAF MAF HPCA HPCA TPRN TPRN ZEB1 ZEB1 JAG2 JAG2 DCHS1 DCHS1 CLRN2 CLRN2 SOD1 SOD1 HOXA13 HOXA13 CHRNA9 CHRNA9 DLL1 DLL1 HESX1 HESX1 IFT20 IFT20 WNT3A WNT3A TBX2 TBX2 DVL2 DVL2 CLDN7 CLDN7 MKS1 MKS1 SOX9 SOX9 USH1G USH1G FOXI1 FOXI1 FGF10 FGF10 GLI3 GLI3 WNT1 WNT1 RIPOR2 RIPOR2 LRRC1 LRRC1 LHFPL5 LHFPL5 PTK7 PTK7 DVL1 DVL1 EPHB2 EPHB2 TTC39C TTC39C ROR1 ROR1 KCNQ4 KCNQ4 NOX3 NOX3 HEY2 HEY2 SOBP SOBP DUOX2 DUOX2 GABRA5 GABRA5 ATP8B1 ATP8B1 BMP4 BMP4 SIX1 SIX1 OC90 OC90 CTHRC1 CTHRC1 FZD6 FZD6 CHD7 CHD7 FGF20 FGF20
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PLPPR4Phospholipid phosphatase-related protein type 4 isoform 1. (715 aa)
JAG1Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1211 aa)
ATP6V1B1Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family. (395 aa)
CYTL1Cytokine like 1. (149 aa)
OTOP1Otopetrin 1. (612 aa)
GRXCR1Glutaredoxin and cysteine rich domain containing 1. (290 aa)
SEC24BSEC24 homolog B, COPII coat complex component. (1258 aa)
ATOH1Atonal bHLH transcription factor 1. (353 aa)
FREM2FRAS1 related extracellular matrix 2. (3174 aa)
TBX3T-box transcription factor TBX3 isoform 2. (745 aa)
CDH23Cadherin related 23. (3354 aa)
PDZD7Uncharacterized protein. (566 aa)
HMX2H6 family homeobox 2. (281 aa)
LRIG1Leucine rich repeats and immunoglobulin like domains 1. (1112 aa)
USH1CUSH1 protein network component harmonin. (858 aa)
NEUROG1Neurogenin 1. (246 aa)
CXCL14SCY domain-containing protein. (110 aa)
POU4F3POU domain protein. (338 aa)
F1SUX2_PIGUncharacterized protein. (258 aa)
MYO7AUnconventional myosin-VIIa; Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails bind to membranous compartments, which are then moved relative to actin filaments. In the retina, plays an important role in the renewal of the outer photoreceptor disks. Plays an important role in the distribution and migration of retinal pigment epithelial (RPE) melanosomes and phagosomes, and in the regulation of opsin transport in retinal photoreceptors. In the inner ear, plays an important role in differenti [...] (2213 aa)
MAPKAPK2MAPK activated protein kinase 2; Belongs to the protein kinase superfamily. (361 aa)
PJVKPejvakin. (351 aa)
NEUROD1Neurogenic differentiation factor. (356 aa)
EPHA4EPH receptor A4. (986 aa)
GBX2Gastrulation brain homeobox 2. (348 aa)
SHHHedgehog protein; Intercellular signal essential for a variety of patterning events during development. (440 aa)
SLC44A4Choline transporter-like protein 4; Choline transporter that plays a role in the choline- acetylcholine system and is required to the efferent innervation of hair cells in the olivocochlear bundle for the maintenance of physiological function of outer hair cells and the protection of hair cells from acoustic injury (By similarity). Also described as a thiamine pyrophosphate transporter in colon, may mediate the absorption of microbiota-generated thiamine pyrophosphate and contribute to host thiamine (vitamin B1) homeostasis (By similarity). (715 aa)
ALDH1A3Aldehyde dehydrogenase 1 family member A3; Belongs to the aldehyde dehydrogenase family. (512 aa)
GRHL3Grainyhead like transcription factor 3. (607 aa)
ENSSSCP00000073689annotation not available (469 aa)
A0A5G2R4X1_PIGUncharacterized protein. (88 aa)
ATG5Autophagy protein 5; Involved in autophagic vesicle formation. Conjugation with ATG12, through a ubiquitin-like conjugating system involving ATG7 as an E1-like activating enzyme and ATG10 as an E2-like conjugating enzyme, is essential for its function. The ATG12-ATG5 conjugate acts as an E3- like enzyme which is required for lipidation of ATG8 family proteins and their association to the vesicle membranes. Involved in mitochondrial quality control after oxidative damage, and in subsequent cellular longevity. Plays a critical role in multiple aspects of lymphocyte development and is ess [...] (287 aa)
HPNHepsin; Belongs to the peptidase S1 family. (449 aa)
MCOLN3Mucolipin 3. (551 aa)
A0A5G2QZ07_PIGGRIP domain-containing protein. (469 aa)
ENSSSCP00000069602annotation not available (97 aa)
SPRY2Sprouty RTK signaling antagonist 2. (315 aa)
BMPERBMP binding endothelial regulator. (699 aa)
PTPRQProtein tyrosine phosphatase receptor type Q. (2327 aa)
MYO6Unconventional myosin-VI; Myosins are actin-based motor molecules with ATPase activity (By similarity). Unconventional myosins serve in intracellular movements (By similarity). Myosin 6 is a reverse-direction motor protein that moves towards the minus-end of actin filaments (By similarity). Has slow rate of actin-activated ADP release due to weak ATP binding. Functions in a variety of intracellular processes such as vesicular membrane trafficking and cell migration. Required for the structural integrity of the Golgi apparatus via the p53-dependent pro-survival pathway (By similarity). [...] (1285 aa)
TSKUTsukushi, small leucine rich proteoglycan. (357 aa)
ADAM10Disintegrin and metalloproteinase domain-containing protein 10; Cleaves the membrane-bound precursor of TNF-alpha to its mature soluble form. Responsible for the proteolytical release of soluble JAM3 from endothelial cells surface. Responsible for the proteolytic release of several other cell-surface proteins, including heparin-binding epidermal growth-like factor, ephrin-A2, CD44, CDH2 and for constitutive and regulated alpha-secretase cleavage of amyloid precursor protein (APP). Contributes to the normal cleavage of the cellular prion protein. Involved in the cleavage of the adhesion [...] (748 aa)
SLC9A3R1Na(+)/H(+) exchange regulatory cofactor NHE-RF; Scaffold protein that connects plasma membrane proteins with members of the ezrin/moesin/radixin family and thereby helps to link them to the actin cytoskeleton and to regulate their surface expression. (365 aa)
FGF8Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (244 aa)
NTN1Netrin-1; Netrins control guidance of CNS commissural axons and peripheral motor axons. Its association with either DCC or some UNC5 receptors will lead to axon attraction or repulsion, respectively. Binding to UNC5C might cause dissociation of UNC5C from polymerized TUBB3 in microtubules and thereby lead to increased microtubule dynamics and axon repulsion (By similarity). Involved in dorsal root ganglion axon projection towards the spinal cord (By similarity). It also serves as a survival factor via its association with its receptors which prevent the initiation of apoptosis. Involve [...] (651 aa)
GABRB2Gamma-aminobutyric acid type A receptor beta2 subunit; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (512 aa)
PTPN11Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (597 aa)
NAGLUN-acetyl-alpha-glucosaminidase. (744 aa)
CCM2CCM2 scaffold protein. (537 aa)
C1QBComplement C1q B chain. (295 aa)
A0A5G2RF62_PIGUncharacterized protein. (97 aa)
SLC4A7Anion exchange protein. (1254 aa)
A0A5G2QET8_PIGGRIP domain-containing protein. (461 aa)
A0A5G2RMB4_PIGGRIP domain-containing protein. (469 aa)
ATG4BCysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (402 aa)
FGF9Fibroblast growth factor 9; Plays an important role in the regulation of embryonic development, cell proliferation, cell differentiation and cell migration. May have a role in glial cell growth and differentiation during development, gliosis during repair and regeneration of brain tissue after damage, differentiation and survival of neuronal cells, and growth stimulation of glial tumors (By similarity). (228 aa)
PCDH15Uncharacterized protein. (984 aa)
TMIETransmembrane inner ear. (154 aa)
CELSR1Cadherin EGF LAG seven-pass G-type receptor 1; Belongs to the G-protein coupled receptor 2 family. (3320 aa)
PHOX2BPaired like homeobox 2B. (314 aa)
AHI1Abelson helper integration site 1. (1114 aa)
DLX6Distal-less homeobox 6. (333 aa)
PLS1Plastin 1. (637 aa)
TTC8Tetratricopeptide repeat domain 8. (587 aa)
LGR5Leucine-rich repeat-containing G-protein coupled receptor 5 isoform 1. (907 aa)
FGF2Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (316 aa)
TIFABTIFA inhibitor. (197 aa)
HES5Hes family bHLH transcription factor 5. (226 aa)
HMX3H6 family homeobox 3. (357 aa)
TFAP2ATranscription factor AP-2 alpha. (439 aa)
PROX1Prospero homeobox 1. (737 aa)
USH2AUncharacterized protein. (1544 aa)
CLRN1Clarin 1. (232 aa)
NOTCH1Neurogenic locus notch homolog protein 1 preproprotein. (2560 aa)
A0A287AZ68_PIGPDZ domain-containing protein. (909 aa)
CECR2CECR2 histone acetyl-lysine reader. (1291 aa)
KCNQ1Potassium voltage-gated channel subfamily KQT member 1; Belongs to the potassium channel family. (771 aa)
LRP10LDL receptor related protein 10. (709 aa)
HES1Uncharacterized protein. (280 aa)
OTX1Orthodenticle homeobox 1. (356 aa)
CDKN1Bp27Kip1. (198 aa)
DLX5Homeobox protein DLX-5. (290 aa)
LRIG3Leucine rich repeats and immunoglobulin like domains 3. (1088 aa)
BCRBCR activator of RhoGEF and GTPase. (1274 aa)
FRZBSecreted frizzled-related protein 3. (325 aa)
FGFR3Fibroblast growth factor receptor. (855 aa)
LIN7AProtein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family. (233 aa)
FZD2Frizzled class receptor 2; Belongs to the G-protein coupled receptor Fz/Smo family. (558 aa)
TCAPUncharacterized protein. (262 aa)
MCM2DNA helicase; Belongs to the MCM family. (930 aa)
GATA3Trans-acting T-cell-specific transcription factor GATA-3. (444 aa)
BLOC1S5Biogenesis of lysosome-related organelles complex 1 subunit 5; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO), such as platelet dense granules and melanosomes. In concert with the AP-3 complex, the BLOC-1 complex is required to target membrane protein cargos into vesicles assembled at cell bodies for delivery into neurites and nerve terminals. The BLOC-1 complex, in association with SNARE proteins, is also proposed to be involved in neurite extension. Plays a role in intracellular vesicle trafficking (By similarity [...] (220 aa)
INSIG2Insulin-induced gene 2 protein; Mediates feedback control of cholesterol synthesis by controlling SCAP and HMGCR. Functions by blocking the processing of sterol regulatory element-binding proteins (SREBPs). Capable of retaining the SCAP-SREBF2 complex in the ER thus preventing it from escorting SREBPs to the Golgi. Seems to regulate the ubiquitin-mediated proteasomal degradation of HMGCR (By similarity). (225 aa)
GSDMEGasdermin E. (495 aa)
EYA1Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (618 aa)
FOXG1Forkhead box G1. (486 aa)
TRIP11Thyroid hormone receptor interactor 11. (1974 aa)
WNT5AProtein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (380 aa)
PRRX1Paired mesoderm homeobox protein 1 isoform pmx-1b. (245 aa)
IFT88Intraflagellar transport 88. (817 aa)
BMP2Bone morphogenetic protein 2 preproprotein. (395 aa)
STOX1Storkhead box 1. (987 aa)
INSIG1Insulin-induced gene protein; Mediates feedback control of cholesterol synthesis. Belongs to the INSIG family. (308 aa)
COL2A1Collagen type II alpha 1 chain. (1486 aa)
SIX4Homeobox domain-containing protein. (785 aa)
LHX3LIM/homeobox protein Lhx3; Required for the establishment of the specialized cells of the pituitary gland and the nervous system. Involved in the development of interneurons and motor neurons in cooperation with LDB1 and ISL1. Acts as a transcriptional activator. Binds to and activates the promoter of the alpha-glycoprotein gene, and synergistically enhances transcription from the prolactin promoter in cooperation with POU1F1/Pit-1 (By similarity). (538 aa)
PAFAH1B1Platelet-activating factor acetylhydrolase IB subunit alpha; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. Required during brain development for the proliferation of neuronal precursors and the migration of newly formed neurons from the ven [...] (410 aa)
FZD3Frizzled class receptor 3; Belongs to the G-protein coupled receptor Fz/Smo family. (666 aa)
WHRNWhirlin. (920 aa)
RPGRIP1LProtein fantom isoform X1. (1270 aa)
NBL1CTCK domain-containing protein. (364 aa)
GRXCR2Glutaredoxin and cysteine rich domain containing 2. (246 aa)
MAFMAF bZIP transcription factor; Belongs to the bZIP family. (408 aa)
HPCANeuron-specific calcium-binding protein hippocalcin; Calcium-binding protein that may play a role in the regulation of voltage-dependent calcium channels. May also play a role in cyclic-nucleotide-mediated signaling through the regulation of adenylate and guanylate cyclases. (293 aa)
TPRNTaperin. (750 aa)
ZEB1Zinc finger E-box binding homeobox 1. (1128 aa)
JAG2Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1371 aa)
DCHS1Dachsous cadherin-related 1. (3294 aa)
CLRN2Clarin 2. (232 aa)
SOD1Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the Cu-Zn superoxide dismutase family. (155 aa)
HOXA13Homeobox A13. (388 aa)
CHRNA9Cholinergic receptor nicotinic alpha 9 subunit. (479 aa)
DLL1Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (729 aa)
HESX1HESX homeobox 1. (185 aa)
IFT20Intraflagellar transport protein 20 homolog isoform X1. (158 aa)
WNT3AProtein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (353 aa)
TBX2T-box 2 protein. (714 aa)
DVL2Dishevelled segment polarity protein 2. (794 aa)
CLDN7Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family. (211 aa)
MKS1MKS transition zone complex subunit 1. (557 aa)
SOX9Transcription factor SOX-9; Transcriptional regulator that plays a role in chondrocytes differentiation and skeletal development. Binds to the COL2A1 promoter and activates COL2A1 expression, as part of a complex with ZNF219. (511 aa)
USH1GUSH1 protein network component sans. (461 aa)
FOXI1Forkhead box protein I1 isoform a. (378 aa)
FGF10Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (211 aa)
GLI3GLI family zinc finger 3. (1586 aa)
WNT1Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (370 aa)
RIPOR2PL48 domain-containing protein. (1063 aa)
LRRC1Leucine rich repeat containing 1. (524 aa)
LHFPL5LHFPL tetraspan subfamily member 5. (219 aa)
PTK7Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family. (1070 aa)
DVL1Dishevelled segment polarity protein 1. (700 aa)
EPHB2EPH receptor B2. (987 aa)
TTC39CTetratricopeptide repeat protein 39C isoform 1. (581 aa)
ROR1Receptor tyrosine kinase like orphan receptor 1; Belongs to the protein kinase superfamily. Tyr protein kinase family. ROR subfamily. (937 aa)
KCNQ4Potassium voltage-gated channel subfamily Q member 4; Belongs to the potassium channel family. (695 aa)
NOX3NADPH oxidase 3. (568 aa)
HEY2Hes related family bHLH transcription factor with YRPW motif 2. (337 aa)
SOBPSine oculis-binding protein homolog isoform X1. (874 aa)
DUOX2Dual oxidase 2; Generates hydrogen peroxide which is required for the activity of thyroid peroxidase/TPO and lactoperoxidase/LPO. Plays a role in thyroid hormones synthesis and lactoperoxidase-mediated antimicrobial defense at the surface of mucosa. May have its own peroxidase activity through its N-terminal peroxidase-like domain. (1539 aa)
GABRA5Gamma-aminobutyric acid type A receptor alpha5 subunit; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (463 aa)
ATP8B1Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1256 aa)
BMP4Bone morphogenetic protein 4. (409 aa)
SIX1Six homeobox 1. (284 aa)
OC90Uncharacterized protein. (472 aa)
CTHRC1Collagen triple helix repeat containing 1. (244 aa)
FZD6Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family. (711 aa)
CHD7Chromodomain helicase DNA binding protein 7. (2863 aa)
FGF20Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (210 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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