STRINGSTRING
YTHDF1 YTHDF1 CSDC2 CSDC2 PARN PARN BOLL BOLL DAZL DAZL REST REST IWS1 IWS1 FASTKD5 FASTKD5 EXOSC2 EXOSC2 LOC100526209 LOC100526209 TRA2A TRA2A CEP57L1 CEP57L1 SAMD4A SAMD4A POLR2G POLR2G YBX1 YBX1 ZFP36L2 ZFP36L2 RBFOX1 RBFOX1 HNRNPA0 HNRNPA0 SRPK3 SRPK3 CELF6 CELF6 PCBP4 PCBP4 LOC102161120 LOC102161120 YTHDF2 YTHDF2 C1QBP C1QBP A0A5G2QLG5_PIG A0A5G2QLG5_PIG CNOT8 CNOT8 NCBP1 NCBP1 NUDT21 NUDT21 PAF1 PAF1 ROCK1 ROCK1 A0A5G2QHJ7_PIG A0A5G2QHJ7_PIG CNOT6 CNOT6 SAFB2 SAFB2 PTBP1 PTBP1 RBM46 RBM46 JMJD6 JMJD6 LRRC27 LRRC27 EXOSC8 EXOSC8 ZFP36L1 ZFP36L1 AGO2 AGO2 RAVER2 RAVER2 LOC110258135 LOC110258135 APEX1 APEX1 SRSF4 SRSF4 RBM25 RBM25 PABPC4 PABPC4 TNRC6B TNRC6B CALCR CALCR SECISBP2 SECISBP2 CSDE1 CSDE1 HNRNPAB HNRNPAB RC3H2 RC3H2 CARHSP1 CARHSP1 PABPC4L PABPC4L DDX5 DDX5 ZC3H10 ZC3H10 SON SON DIS3L2 DIS3L2 CELF3 CELF3 ZC3H12A ZC3H12A AXIN2 AXIN2 ELAVL4 ELAVL4 CPEB3 CPEB3 ZC3H14 ZC3H14 RNASEL RNASEL MYEF2 MYEF2 PRDX6 PRDX6 RBM39 RBM39 SRPK2 SRPK2 QKI QKI CELF1 CELF1 A0A287B578_PIG A0A287B578_PIG MOV10 MOV10 ANGEL2 ANGEL2 TRIM71 TRIM71 FASTKD3 FASTKD3 YTHDC1 YTHDC1 PUF60 PUF60 CELF4 CELF4 CNOT2 CNOT2 LSM1 LSM1 YTHDF3 YTHDF3 FASTK FASTK PATL1 PATL1 SRRM1 SRRM1 SRSF12 SRSF12 FTO FTO SRSF7 SRSF7 METTL14 METTL14 PRR5L PRR5L PNPT1 PNPT1 LEO1 LEO1 RBM11 RBM11 IGF2BP3 IGF2BP3 SLC39A5 SLC39A5 DYRK1A DYRK1A FASTKD1 FASTKD1 GDNF GDNF MBNL1 MBNL1 U2AF2 U2AF2 PUM2 PUM2 CELF5 CELF5 SLC11A1 SLC11A1 CNOT3 CNOT3 RC3H1 RC3H1 PUM1 PUM1 PAN2 PAN2 GTPBP1 GTPBP1 NOVA1 NOVA1 SRSF2 SRSF2 ZBTB7A ZBTB7A TARDBP TARDBP WTAP WTAP CNOT7 CNOT7 A1CF A1CF CPSF6 CPSF6 ALKBH5 ALKBH5 TENT5B TENT5B TNRC6C TNRC6C TNRC6A TNRC6A DHX34 DHX34 ZC3HAV1 ZC3HAV1 KHDRBS2 KHDRBS2 UPF1 UPF1 RBM42 RBM42 EIF4ENIF1 EIF4ENIF1 RBM23 RBM23 HNRNPU HNRNPU NANOS1 NANOS1 NSRP1 NSRP1 RBM24 RBM24 HSF1 HSF1 EXOSC9 EXOSC9 GIGYF2 GIGYF2 NOVA2 NOVA2 CELF2 CELF2 PKP1 PKP1 PKP3 PKP3 RIDA RIDA RBFOX3 RBFOX3 AHCYL1 AHCYL1 A0A286ZLG7_PIG A0A286ZLG7_PIG DDX17 DDX17 RBFOX2 RBFOX2 RBM5 RBM5 DAZAP1 DAZAP1 FUS FUS LOC110257929 LOC110257929 FMR1 FMR1 MBNL3 MBNL3 SAMD4B SAMD4B KHDRBS3 KHDRBS3 RBMX RBMX DHX9 DHX9 RBM10 RBM10 TRAF5 TRAF5 PRR3 PRR3 IGF2BP2 IGF2BP2 RBM7 RBM7 ZC3H3 ZC3H3 PABPC1 PABPC1 TIA1 TIA1 DHX36 DHX36 HNRNPK HNRNPK KHDRBS1 KHDRBS1 NOCT NOCT MEX3D MEX3D HNRNPC HNRNPC PLEKHN1 PLEKHN1 CNOT1 CNOT1 THRAP3 THRAP3 RBM8A RBM8A DCP1A DCP1A FXR1 FXR1 DCP1B DCP1B ZFP36 ZFP36 PABPN1L PABPN1L TRA2B TRA2B IGF2BP1 IGF2BP1 SNW1 SNW1 FAM172A FAM172A IKBKE IKBKE FXR2 FXR2 SUPT6H SUPT6H CASC3 CASC3 MEIOC MEIOC EIF4A3 EIF4A3 LARP1 LARP1 PTCD2 PTCD2 TBRG4 TBRG4 NCL NCL FASTKD2 FASTKD2 MAPKAPK2 MAPKAPK2 DCPS DCPS NUP98 NUP98 DND1 DND1 DCP2 DCP2 NANOS3 NANOS3 ELAVL1 ELAVL1 SAFB SAFB MYOD1 MYOD1 PRPF19 PRPF19 CPSF7 CPSF7 TENT5D TENT5D PDE12 PDE12 RBM15B RBM15B EXOSC7 EXOSC7 MYD88 MYD88 SMU1 SMU1 CDC73 CDC73 HMX2 HMX2 SRRM4 SRRM4 PCID2 PCID2 MBNL2 MBNL2 PAN3 PAN3 HNRNPD HNRNPD CNOT6L CNOT6L F1RWB7_PIG F1RWB7_PIG NBAS NBAS RBM38 RBM38 PABPC1L PABPC1L E2F1 E2F1 RBM15 RBM15 TENT5C TENT5C SF3B4 SF3B4 VIRMA VIRMA TRAF2 TRAF2 CDK9 CDK9 EXOSC3 EXOSC3 SLTM SLTM TENT5A TENT5A TRAF3IP2 TRAF3IP2 SYNCRIP SYNCRIP VIP VIP NANOS2 NANOS2 EXOSC5 EXOSC5 TTC5 TTC5 F1SHL4_PIG F1SHL4_PIG SRSF3 SRSF3 SRPK1 SRPK1 APOBEC1 APOBEC1
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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YTHDF1YTH N6-methyladenosine RNA binding protein 1. (652 aa)
CSDC2Cold shock domain containing C2. (153 aa)
PARNPoly(A)-specific ribonuclease. (715 aa)
BOLLBoule homolog, RNA binding protein. (430 aa)
DAZLDeleted in azoospermia-like protein. (295 aa)
RESTRE1 silencing transcription factor. (1108 aa)
IWS1Interacts with SUPT6H, CTD assembly factor 1. (847 aa)
FASTKD5FAST kinase domains 5. (813 aa)
EXOSC2Exosome component 2. (271 aa)
LOC100526209Uncharacterized protein. (788 aa)
TRA2ATransformer 2 alpha homolog. (294 aa)
CEP57L1Centrosomal protein 57 like 1. (630 aa)
SAMD4ASterile alpha motif domain containing 4A. (718 aa)
POLR2GRNA polymerase II subunit G. (231 aa)
YBX1Y-box binding protein 1. (419 aa)
ZFP36L2ZFP36 ring finger protein like 2. (564 aa)
RBFOX1RNA binding fox-1 homolog 1. (577 aa)
HNRNPA0Heterogeneous nuclear ribonucleoprotein A0. (302 aa)
SRPK3SRSF protein kinase 3; Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains. Phosphorylates the SR splicing factor SRSF1 and the lamin-B receptor (LBR) in vitro. Required for normal muscle development (By similarity). (604 aa)
CELF6Uncharacterized protein. (610 aa)
PCBP4Poly(rC) binding protein 4. (404 aa)
LOC102161120Uncharacterized protein. (392 aa)
YTHDF2YTH N6-methyladenosine RNA binding protein 2. (600 aa)
C1QBPMitochondrial complement component 1 Q subcomponent-binding protein. (281 aa)
A0A5G2QLG5_PIGUncharacterized protein. (125 aa)
CNOT8CCR4-NOT transcription complex subunit 8. (312 aa)
NCBP1Nuclear cap binding protein subunit 1. (1117 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (237 aa)
PAF1PAF1 homolog, Paf1/RNA polymerase II complex component. (560 aa)
ROCK1Rho-associated protein kinase; Protein kinase which is a key regulator of actin cytoskeleton and cell polarity. (1354 aa)
A0A5G2QHJ7_PIGUncharacterized protein. (148 aa)
CNOT6CCR4-NOT transcription complex subunit 6. (590 aa)
SAFB2Scaffold attachment factor B2. (976 aa)
PTBP1Polypyrimidine tract-binding protein 1; Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre- mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre- mRNA. Represses the splicing of MAPT/Tau exon 10 (By similarity). (647 aa)
RBM46RNA binding motif protein 46. (533 aa)
JMJD6Jumonji domain containing 6, arginine demethylase and lysine hydroxylase. (413 aa)
LRRC27Leucine rich repeat containing 27. (557 aa)
EXOSC8Exosome component 8. (281 aa)
ZFP36L1ZFP36 ring finger protein like 1. (348 aa)
AGO2Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] (874 aa)
RAVER2Ribonucleoprotein, PTB binding 2. (691 aa)
LOC110258135Uncharacterized protein. (177 aa)
APEX1DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (318 aa)
SRSF4Serine and arginine rich splicing factor 4. (489 aa)
RBM25RNA binding motif protein 25. (862 aa)
PABPC4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (660 aa)
TNRC6BTrinucleotide repeat containing adaptor 6B. (1868 aa)
CALCRCalcitonin receptor; This is a receptor for calcitonin. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase. The calcitonin receptor is thought to couple to the heterotrimeric guanosine triphosphate-binding protein that is sensitive to cholera toxin. The receptor can also couple to an additional signaling pathway via a pertussis toxin-sensitive g protein in isolated osteoclasts and in LLC-PK1 cells; Belongs to the G-protein coupled receptor 2 family. (490 aa)
SECISBP2Selenocysteine insertion sequence-binding protein 2 isoform 1. (848 aa)
CSDE1Cold shock domain containing E1. (851 aa)
HNRNPABUncharacterized protein. (345 aa)
RC3H2Ring finger and CCCH-type domains 2. (1192 aa)
CARHSP1Calcium regulated heat stable protein 1. (146 aa)
PABPC4LPoly(A) binding protein cytoplasmic 4 like. (341 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (617 aa)
ZC3H10Zinc finger CCCH-type containing 10. (435 aa)
SONSON DNA binding protein. (2447 aa)
DIS3L2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase, such as ZCCHC11/TUT4. Mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. Mediates degradation of uridylated pre-let-7 miRNAs, contributing to the maintenance of embryonic stem (ES) cells. Essential for correct mi [...] (914 aa)
CELF3CUGBP Elav-like family member 3. (495 aa)
ZC3H12AZinc finger CCCH-type containing 12A. (582 aa)
AXIN2Axin-2. (843 aa)
ELAVL4ELAV-like protein; Belongs to the RRM elav family. (487 aa)
CPEB3Cytoplasmic polyadenylation element binding protein 3. (758 aa)
ZC3H14Zinc finger CCCH-type containing 14. (736 aa)
RNASEL2-5A-dependent ribonuclease. (743 aa)
MYEF2Myelin expression factor 2. (576 aa)
PRDX6Peroxiredoxin-6; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Can reduce H(2)O(2) and short chain organic, fatty acid, and phospholipid hydroperoxides. Also has phospholipase activity, and can therefore either reduce the oxidized sn-2 fatty acyl grup of phospholipids (peroxidase activity) or hydrolyze the sn-2 ester bond of phospholipids (phospholipase activity). These activities are dependent on binding to phospholipids at acidic pH and to oxidized phospholipds at cytosolic pH. Plays a role [...] (224 aa)
RBM39RNA-binding protein 39 isoform a. (530 aa)
SRPK2SRSF protein kinase 2. (763 aa)
QKIProtein quaking; RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs such as MBP and CDKN1B which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of MAG pre-mRNA. Acts as a translational repressor (By similarity). (338 aa)
CELF1CUGBP Elav-like family member 1. (551 aa)
A0A287B578_PIGUncharacterized protein. (103 aa)
MOV10Mov10 RISC complex RNA helicase. (1093 aa)
ANGEL2Protein angel homolog 2 isoform a. (544 aa)
TRIM71E3 ubiquitin-protein ligase TRIM71. (869 aa)
FASTKD3FAST kinase domains 3. (662 aa)
YTHDC1YTH domain containing 1. (743 aa)
PUF60Poly(U)-binding-splicing factor PUF60 isoform a. (587 aa)
CELF4CUGBP Elav-like family member 4. (545 aa)
CNOT2NOT2_3_5 domain-containing protein. (578 aa)
LSM1Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone (By similarity). (302 aa)
YTHDF3YTH domain-containing family protein 3 isoform b. (588 aa)
FASTKFas activated serine/threonine kinase. (668 aa)
PATL1PAT1 homolog 1, processing body mRNA decay factor. (786 aa)
SRRM1Serine and arginine repetitive matrix 1. (968 aa)
SRSF12Serine and arginine rich splicing factor 12. (262 aa)
FTOFTO_NTD domain-containing protein. (509 aa)
SRSF7Serine/arginine-rich splicing factor 7 isoform 1. (238 aa)
METTL14N6-adenosine-methyltransferase non-catalytic subunit; Belongs to the MT-A70-like family. (456 aa)
PRR5LProline rich 5 like. (473 aa)
PNPT1Polyribonucleotide nucleotidyltransferase 1, mitochondrial. (784 aa)
LEO1LEO1 homolog, Paf1/RNA polymerase II complex component. (668 aa)
RBM11Splicing regulator RBM11 isoform X1. (237 aa)
IGF2BP3Insulin-like growth factor 2 mRNA-binding protein 3. (586 aa)
SLC39A5Solute carrier family 39 member 5. (554 aa)
DYRK1ADual specificity tyrosine phosphorylation regulated kinase 1A. (764 aa)
FASTKD1FAST kinase domains 1. (791 aa)
GDNFGlial cell line-derived neurotrophic factor isoform 1. (211 aa)
MBNL1Muscleblind like splicing regulator 1. (436 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (475 aa)
PUM2Pumilio RNA binding family member 2. (1072 aa)
CELF5CUGBP Elav-like family member 5 isoform X1. (485 aa)
SLC11A1Natural resistance-associated macrophage protein 1; Divalent transition metal (iron and manganese) transporter involved in iron metabolism and host resistance to certain pathogens. Macrophage-specific membrane transport function. Controls natural resistance to infection with intracellular parasites. Pathogen resistance involves sequestration of Fe(2+) and Mn(2+), cofactors of both prokaryotic and eukaryotic catalases and superoxide dismutases, not only to protect the macrophage against its own generation of reactive oxygen species, but to deny the cations to the pathogen for synthesis [...] (538 aa)
CNOT3CCR4-NOT transcription complex subunit 3. (774 aa)
RC3H1Ring finger and CCCH-type domains 1. (1132 aa)
PUM1Pumilio RNA binding family member 1. (1189 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1198 aa)
GTPBP1GTP binding protein 1. (691 aa)
NOVA1NOVA alternative splicing regulator 1. (487 aa)
SRSF2Serine/arginine-rich splicing factor 2; Necessary for the splicing of pre-mRNA. It is required for formation of the earliest ATP-dependent splicing complex and interacts with spliceosomal components bound to both the 5'- and 3'-splice sites during spliceosome assembly. It also is required for ATP-dependent interactions of both U1 and U2 snRNPs with pre-mRNA. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Binds to purine-rich RNA sequences, either 5'-AGSAGAGTA-3' (S=C or G) or 5 [...] (221 aa)
ZBTB7AZinc finger and BTB domain containing 7A. (596 aa)
TARDBPTAR DNA binding protein. (414 aa)
WTAPUncharacterized protein. (649 aa)
CNOT7CCR4-NOT transcription complex subunit 7 isoform 1. (285 aa)
A1CFAPOBEC1 complementation factor isoform 2. (595 aa)
CPSF6Cleavage and polyadenylation specificity factor subunit 6 isoform 2. (588 aa)
ALKBH5AlkB homolog 5, RNA demethylase. (394 aa)
TENT5BTerminal nucleotidyltransferase 5B. (426 aa)
TNRC6CTrinucleotide repeat containing adaptor 6C. (1932 aa)
TNRC6ATrinucleotide repeat containing adaptor 6A. (1989 aa)
DHX34DExH-box helicase 34. (1098 aa)
ZC3HAV1Zinc finger CCCH-type antiviral protein 1 isoform 1. (894 aa)
KHDRBS2KH RNA binding domain containing, signal transduction associated 2. (349 aa)
UPF1UPF1 RNA helicase and ATPase. (1127 aa)
RBM42RNA binding motif protein 42. (477 aa)
EIF4ENIF1Eukaryotic translation initiation factor 4E nuclear import factor 1. (984 aa)
RBM23RNA binding motif protein 23. (429 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U isoform a. (825 aa)
NANOS1Nanos C2HC-type zinc finger 1; Belongs to the nanos family. (284 aa)
NSRP1Nuclear speckle splicing regulatory protein 1. (614 aa)
RBM24RRM domain-containing protein. (528 aa)
HSF1Heat shock transcription factor 1. (590 aa)
EXOSC9Exosome component 9. (455 aa)
GIGYF2GRB10 interacting GYF protein 2. (1310 aa)
NOVA2NOVA alternative splicing regulator 2. (492 aa)
CELF2Uncharacterized protein. (542 aa)
PKP1Plakophilin-1 isoform 1a. (727 aa)
PKP3Plakophilin 3. (1145 aa)
RIDAReactive intermediate imine deaminase A homolog. (137 aa)
RBFOX3RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events. (371 aa)
AHCYL1Adenosylhomocysteinase-like protein 1; Belongs to the adenosylhomocysteinase family. (530 aa)
A0A286ZLG7_PIGUncharacterized protein. (135 aa)
DDX17DEAD-box helicase 17; Belongs to the DEAD box helicase family. (588 aa)
RBFOX2RNA binding fox-1 homolog 2. (578 aa)
RBM5RNA binding motif protein 5. (893 aa)
DAZAP1DAZ associated protein 1. (417 aa)
FUSFUS RNA binding protein. (518 aa)
LOC110257929RRM domain-containing protein. (307 aa)
FMR1Fragile X mental retardation protein 1. (632 aa)
MBNL3Muscleblind like splicing regulator 3. (369 aa)
SAMD4BSterile alpha motif domain containing 4B. (827 aa)
KHDRBS3KH RNA binding domain containing, signal transduction associated 3. (352 aa)
RBMXRNA binding motif protein X-linked. (408 aa)
DHX9ATP-dependent RNA helicase A. (1384 aa)
RBM10RNA binding motif protein 10. (931 aa)
TRAF5TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (558 aa)
PRR3Proline-rich protein 3. (222 aa)
IGF2BP2Insulin like growth factor 2 mRNA binding protein 2. (592 aa)
RBM7RNA-binding protein 7 isoform b. (265 aa)
ZC3H3Zinc finger CCCH-type containing 3. (972 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (636 aa)
TIA1TIA1 cytotoxic granule associated RNA binding protein. (386 aa)
DHX36DEAH (Asp-Glu-Ala-His) box polypeptide 36 tv1. (1012 aa)
HNRNPKUncharacterized protein. (464 aa)
KHDRBS1KH RNA binding domain containing, signal transduction associated 1. (443 aa)
NOCTNocturnin. (427 aa)
MEX3DRNA-binding protein MEX3D isoform 1. (649 aa)
HNRNPCHeterogeneous nuclear ribonucleoproteins C1/C2 isoform X1. (307 aa)
PLEKHN1Pleckstrin homology domain containing N1. (564 aa)
CNOT1CCR4-NOT transcription complex subunit 1. (2343 aa)
THRAP3Thyroid hormone receptor-associated protein 3 isoform 1. (958 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
DCP1AmRNA-decapping enzyme 1A; Necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Contributes to the transactivation of target genes after stimulation by TGFB1; Belongs to the DCP1 family. (580 aa)
FXR1Fragile X mental retardation syndrome-related protein 1 isoform X1. (677 aa)
DCP1BDecapping mRNA 1B. (559 aa)
ZFP36Uncharacterized protein. (372 aa)
PABPN1LPoly(A) binding protein nuclear 1 like, cytoplasmic. (282 aa)
TRA2BTransformer 2 beta homolog. (288 aa)
IGF2BP1Insulin-like growth factor 2 mRNA-binding protein 1 isoform X1. (577 aa)
SNW1SNW domain-containing protein 1 isoform 2. (536 aa)
FAM172AFamily with sequence similarity 172 member A. (416 aa)
IKBKEInhibitor of nuclear factor kappa-B kinase subunit epsilon isoform 1. (718 aa)
FXR2FMR1 autosomal homolog 2. (667 aa)
SUPT6HTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1603 aa)
CASC3CASC3 exon junction complex subunit. (633 aa)
MEIOCMeiosis specific with coiled-coil domain. (940 aa)
EIF4A3Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...] (488 aa)
LARP1La ribonucleoprotein domain family member 1. (1101 aa)
PTCD2Pentatricopeptide repeat domain 2. (425 aa)
TBRG4FAST kinase domain-containing protein 4; Plays a role in processing of mitochondrial RNA precursors and in stabilization of a subset of mature mitochondrial RNA species, such as MT-CO1, MT-CO2, MT-CYB, MT-CO3, MT-ND3, MT-ND5 and MT-ATP8/6. May play a role in cell cycle progression. (632 aa)
NCLZinc finger protein Pegasus. (724 aa)
FASTKD2FAST kinase domain-containing protein 2, mitochondrial. (689 aa)
MAPKAPK2MAPK activated protein kinase 2; Belongs to the protein kinase superfamily. (361 aa)
DCPSm7GpppX diphosphatase; Decapping scavenger enzyme that catalyzes the cleavage of a residual cap structure following the degradation of mRNAs by the 3'->5' exosome-mediated mRNA decay pathway. Hydrolyzes cap analog structures like 7-methylguanosine nucleoside triphosphate (m7GpppG) with up to 10 nucleotide substrates (small capped oligoribonucleotides) and specifically releases 5'-phosphorylated RNA fragments and 7- methylguanosine monophosphate (m7GMP). Cleaves cap analog structures like tri-methyl guanosine nucleoside triphosphate (m3(2,2,7)GpppG) with very poor efficiency. Does not h [...] (337 aa)
NUP98Nucleoporin 98. (1753 aa)
DND1DND microRNA-mediated repression inhibitor 1. (353 aa)
DCP2Decapping mRNA 2. (478 aa)
NANOS3Nanos C2HC-type zinc finger 3; Belongs to the nanos family. (261 aa)
ELAVL1ELAV-like protein; Belongs to the RRM elav family. (326 aa)
SAFBScaffold attachment factor B. (985 aa)
MYOD1Myoblast determination protein 1; Acts as a transcriptional activator that promotes transcription of muscle-specific target genes and plays a role in muscle differentiation. Together with MYF5 and MYOG, co-occupies muscle-specific gene promoter core region during myogenesis. Induces fibroblasts to differentiate into myoblasts. Interacts with and is inhibited by the twist protein. This interaction probably involves the basic domains of both proteins (By similarity). (319 aa)
PRPF19Pre-mRNA-processing factor 19. (504 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (471 aa)
TENT5DTerminal nucleotidyltransferase 5D. (390 aa)
PDE122',5'-phosphodiesterase 12 isoform 1. (609 aa)
RBM15BRNA binding motif protein 15B. (854 aa)
EXOSC7Uncharacterized protein. (349 aa)
MYD88Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. Acts via IRAK1, IRAK2, IRF7 and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response. Increases IL-8 transcription. Involved in IL-18-mediated signaling pathway. Activates IRF1 resulting in its rapid migration into the nucleus to mediate an efficient induction of IFN-beta, NOS2/INOS, and IL12A genes (By similarity). MyD88-mediated signaling in intestinal epithelial cells is cruc [...] (323 aa)
SMU1Uncharacterized protein. (511 aa)
CDC73Cell division cycle 73. (531 aa)
HMX2H6 family homeobox 2. (281 aa)
SRRM4Serine/arginine repetitive matrix 4. (611 aa)
PCID2PCI domain-containing protein 2 isoform X1. (399 aa)
MBNL2Muscleblind like splicing regulator 2. (391 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (906 aa)
HNRNPDHeterogeneous nuclear ribonucleoprotein D0 isoform a. (355 aa)
CNOT6LCCR4-NOT transcription complex subunit 6 like. (651 aa)
F1RWB7_PIGCSD_1 domain-containing protein. (264 aa)
NBASNeuroblastoma amplified sequence. (2318 aa)
RBM38RNA-binding region (RNP1, RRM) containing 1. (239 aa)
PABPC1LPolyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (610 aa)
E2F1E2F transcription factor 1. (435 aa)
RBM15RNA binding motif protein 15. (1006 aa)
TENT5CTerminal nucleotidyltransferase 5C. (423 aa)
SF3B4Splicing factor 3b subunit 4. (424 aa)
VIRMAVir like m6A methyltransferase associated. (1812 aa)
TRAF2TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (520 aa)
CDK9Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (488 aa)
EXOSC3Exosome complex component RRP40 isoform 1. (275 aa)
SLTMSAFB like transcription modulator. (1190 aa)
TENT5ATerminal nucleotidyltransferase 5A. (434 aa)
TRAF3IP2TRAF3 interacting protein 2. (574 aa)
SYNCRIPSynaptotagmin binding cytoplasmic RNA interacting protein. (623 aa)
VIPVasoactive intestinal peptide; VIP causes vasodilation, lowers arterial blood pressure, stimulates myocardial contractility, increases glycogenolysis and relaxes the smooth muscle of trachea, stomach and gall bladder; Belongs to the glucagon family. (167 aa)
NANOS2Nanos C2HC-type zinc finger 2; Belongs to the nanos family. (138 aa)
EXOSC5Exosome component 5. (299 aa)
TTC5Tetratricopeptide repeat domain 5. (463 aa)
F1SHL4_PIGUncharacterized protein. (247 aa)
SRSF3Serine and arginine rich splicing factor 3. (164 aa)
SRPK1SRSF protein kinase 1. (831 aa)
APOBEC1Apolipoprotein B mRNA editing enzyme catalytic subunit 1. (236 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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