STRINGSTRING
COL16A1 COL16A1 COL3A1 COL3A1 COL1A2 COL1A2 COL5A3 COL5A3 COL5A1 COL5A1 LUM LUM COL5A2 COL5A2 COL2A1 COL2A1 COL11A2 COL11A2 COL1A1 COL1A1 COL11A1 COL11A1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
COL16A1Collagen alpha-1(XVI) chain isoform X2. (1624 aa)
COL3A1Collagen alpha-1(III) chain preproprotein. (1471 aa)
COL1A2Fibrillar collagen NC1 domain-containing protein. (1135 aa)
COL5A3Collagen type V alpha 3 chain. (1747 aa)
COL5A1Fibrillar collagen NC1 domain-containing protein. (1918 aa)
LUMLumican. (341 aa)
COL5A2Collagen alpha-2(V) chain preproprotein. (1499 aa)
COL2A1Collagen type II alpha 1 chain. (1486 aa)
COL11A2Collagen type XI alpha 2 chain. (1796 aa)
COL1A1Collagen type I alpha 1 chain. (1477 aa)
COL11A1Collagen type XI alpha 1 chain. (1816 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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