12 items (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PWP2	Uncharacterized protein. (1096 aa)
	FCF1	FCF1 rRNA-processing protein. (198 aa)
	WDR46	WD repeat-containing protein 46 isoform 1. (656 aa)
	UTP20	UTP20 small subunit processome component. (2781 aa)
	UTP14A	Uncharacterized protein. (773 aa)
	NOP58	NOP58 ribonucleoprotein. (546 aa)
	UTP4	U3 small nucleolar RNA-associated protein 4 homolog isoform 1. (686 aa)
	UTP3	Sas10 domain-containing protein. (474 aa)
	EMG1	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1. (244 aa)
	UTP23	UTP23 small subunit processome component. (251 aa)
	NOL10	Nucleolar protein 10 isoform 1. (688 aa)
	KRR1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (375 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EMG1	FCF1	ENSSSCP00000026081	ENSSSCP00000045943	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	FCF1 rRNA-processing protein.	0.995
EMG1	KRR1	ENSSSCP00000026081	ENSSSCP00000054044	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.995
EMG1	NOL10	ENSSSCP00000026081	ENSSSCP00000033617	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	Nucleolar protein 10 isoform 1.	0.974
EMG1	NOP58	ENSSSCP00000026081	ENSSSCP00000022063	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	NOP58 ribonucleoprotein.	0.995
EMG1	PWP2	ENSSSCP00000026081	ENSSSCP00000064459	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	Uncharacterized protein.	0.990
EMG1	UTP14A	ENSSSCP00000026081	ENSSSCP00000013453	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	Uncharacterized protein.	0.995
EMG1	UTP20	ENSSSCP00000026081	ENSSSCP00000000929	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	UTP20 small subunit processome component.	0.990
EMG1	UTP23	ENSSSCP00000026081	ENSSSCP00000026123	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	UTP23 small subunit processome component.	0.884
EMG1	UTP3	ENSSSCP00000026081	ENSSSCP00000023124	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	Sas10 domain-containing protein.	0.990
EMG1	UTP4	ENSSSCP00000026081	ENSSSCP00000063268	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	U3 small nucleolar RNA-associated protein 4 homolog isoform 1.	0.992
EMG1	WDR46	ENSSSCP00000026081	ENSSSCP00000057553	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	WD repeat-containing protein 46 isoform 1.	0.992
FCF1	EMG1	ENSSSCP00000045943	ENSSSCP00000026081	FCF1 rRNA-processing protein.	Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.	0.995
FCF1	KRR1	ENSSSCP00000045943	ENSSSCP00000054044	FCF1 rRNA-processing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.996
FCF1	NOL10	ENSSSCP00000045943	ENSSSCP00000033617	FCF1 rRNA-processing protein.	Nucleolar protein 10 isoform 1.	0.979
FCF1	NOP58	ENSSSCP00000045943	ENSSSCP00000022063	FCF1 rRNA-processing protein.	NOP58 ribonucleoprotein.	0.989
FCF1	PWP2	ENSSSCP00000045943	ENSSSCP00000064459	FCF1 rRNA-processing protein.	Uncharacterized protein.	0.973
FCF1	UTP14A	ENSSSCP00000045943	ENSSSCP00000013453	FCF1 rRNA-processing protein.	Uncharacterized protein.	0.995
FCF1	UTP20	ENSSSCP00000045943	ENSSSCP00000000929	FCF1 rRNA-processing protein.	UTP20 small subunit processome component.	0.994
FCF1	UTP23	ENSSSCP00000045943	ENSSSCP00000026123	FCF1 rRNA-processing protein.	UTP23 small subunit processome component.	0.758
FCF1	UTP3	ENSSSCP00000045943	ENSSSCP00000023124	FCF1 rRNA-processing protein.	Sas10 domain-containing protein.	0.996