STRINGSTRING
PABPC1L PABPC1L HENMT1 HENMT1 MEX3A MEX3A ZC3H12D ZC3H12D RC3H2 RC3H2 PNRC2 PNRC2 TNRC6B TNRC6B PABPC4 PABPC4 AGO2 AGO2 ROCK2 ROCK2 RBPMS RBPMS AJUBA AJUBA MAEL MAEL LOC100738935 LOC100738935 LARP4B LARP4B A0A5G2QHJ7_PIG A0A5G2QHJ7_PIG DDX4 DDX4 YTHDF2 YTHDF2 UHMK1 UHMK1 XRN1 XRN1 LSM14A LSM14A RBFOX1 RBFOX1 POLDIP3 POLDIP3 A0A5G2QZE0_PIG A0A5G2QZE0_PIG MOV10L1 MOV10L1 LGALSL LGALSL FASTKD5 FASTKD5 SUMO1 SUMO1 MCRIP1 MCRIP1 TDRKH TDRKH LOC100737265 LOC100737265 HNRNPL HNRNPL ATXN2L ATXN2L MBNL1 MBNL1 OGFOD1 OGFOD1 RC3H1 RC3H1 PUM1 PUM1 CT55 CT55 EIF2S1 EIF2S1 EIF4ENIF1 EIF4ENIF1 VCP VCP G3BP1 G3BP1 HSF1 HSF1 TIAL1 TIAL1 C8orf88 C8orf88 PPP1R27 PPP1R27 ATXN2 ATXN2 YTHDF1 YTHDF1 FMR1 FMR1 IGF2BP2 IGF2BP2 PABPC1 PABPC1 TIA1 TIA1 DHX36 DHX36 TDRD1 TDRD1 DCP1A DCP1A TOP1 TOP1 ZFP36 ZFP36 PIWIL2 PIWIL2 DDX28 DDX28 ZFAND1 ZFAND1 TDRD6 TDRD6 FXR2 FXR2 RNF135 RNF135 GRB7 GRB7 ENDOV ENDOV LARP1 LARP1 ASZ1 ASZ1 FASTKD2 FASTKD2 HOXD10 HOXD10 F1SF34_PIG F1SF34_PIG UBAP2 UBAP2 DHX30 DHX30 ZCCHC13 ZCCHC13 KIAA0355 KIAA0355 PIWIL4 PIWIL4 TNRC6C TNRC6C TNRC6A TNRC6A PNRC1 PNRC1 LARP1B LARP1B EDC3 EDC3 TUT4 TUT4 NANOS2 NANOS2 BTBD1 BTBD1 EDC4 EDC4 TDRD9 TDRD9 NRDE2 NRDE2 CARHSP1 CARHSP1 PABPC4L PABPC4L DIS3L2 DIS3L2 CAPRIN1 CAPRIN1 AGO4 AGO4 G3BP2 G3BP2 ZC3H12A ZC3H12A TDRD10 TDRD10 MEX3B MEX3B CELF1 CELF1 SMG1 SMG1 MOV10 MOV10 TRUB2 TRUB2 SHFL SHFL TRIM71 TRIM71 ARC ARC YTHDC2 YTHDC2 YTHDF3 YTHDF3 ZC3H12C ZC3H12C PATL1 PATL1 DDX6 DDX6 HABP4 HABP4 MIEF1 MIEF1 TDRD5 TDRD5 RPUSD4 RPUSD4 DDX25 DDX25 DCP2 DCP2 NANOS3 NANOS3 ELAVL1 ELAVL1 BTBD2 BTBD2 ZC3H12B ZC3H12B DDX3X DDX3X RPUSD3 RPUSD3 LIMD1 LIMD1 PIWIL1 PIWIL1 GRSF1 GRSF1 MCRIP2 MCRIP2
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
PABPC1LPolyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (610 aa)
HENMT1HEN methyltransferase 1. (383 aa)
MEX3AMex-3 RNA binding family member A. (519 aa)
ZC3H12DZinc finger CCCH-type containing 12D. (507 aa)
RC3H2Ring finger and CCCH-type domains 2. (1192 aa)
PNRC2Uncharacterized protein. (177 aa)
TNRC6BTrinucleotide repeat containing adaptor 6B. (1868 aa)
PABPC4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (660 aa)
AGO2Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] (874 aa)
ROCK2Rho-associated protein kinase 2; Protein kinase which is a key regulator of actin cytoskeleton and cell polarity. Involved in regulation of smooth muscle contraction, actin cytoskeleton organization, stress fiber and focal adhesion formation, neurite retraction, cell adhesion and motility via phosphorylation of ADD1, BRCA2, CNN1, EZR, DPYSL2, EP300, MSN, MYL9/MLC2, NPM1, RDX, PPP1R12A and VIM. Phosphorylates SORL1 and IRF4. Acts as a negative regulator of VEGF-induced angiogenic endothelial cell activation. Positively regulates the activation of p42/MAPK1- p44/MAPK3 and of p90RSK/RPS6K [...] (1397 aa)
RBPMSRNA binding protein, mRNA processing factor. (223 aa)
AJUBAAjuba LIM protein. (565 aa)
MAELProtein maelstrom homolog; Plays a central role during spermatogenesis by repressing transposable elements and preventing their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and governs the methylation and subsequent repression of transposons. Its association with piP-bodies suggests a participation in the secondary piRNAs metabolic process. Required for the localization of germ-cell factors to the meiotic n [...] (477 aa)
LOC100738935Uncharacterized protein. (415 aa)
LARP4BHTH La-type RNA-binding domain-containing protein. (1587 aa)
A0A5G2QHJ7_PIGUncharacterized protein. (148 aa)
DDX4Probable ATP-dependent RNA helicase DDX4; ATP-dependent RNA helicase required during spermatogenesis to repress transposable elements and preventing their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and governs the methylation and subsequent repression of transposons. Involved in the secondary piRNAs metabolic process, the production of piRNAs in fetal male germ cells through a ping-pong amplification cycl [...] (744 aa)
YTHDF2YTH N6-methyladenosine RNA binding protein 2. (600 aa)
UHMK1Serine/threonine-protein kinase Kist isoform 1. (419 aa)
XRN15'-3' exoribonuclease 1. (1703 aa)
LSM14AUncharacterized protein. (475 aa)
RBFOX1RNA binding fox-1 homolog 1. (577 aa)
POLDIP3Polymerase delta-interacting protein 3 isoform X1. (420 aa)
A0A5G2QZE0_PIGUncharacterized protein. (239 aa)
MOV10L1AAA_12 domain-containing protein. (119 aa)
LGALSLGalectin. (183 aa)
FASTKD5FAST kinase domains 5. (813 aa)
SUMO1Small ubiquitin-related modifier 1. (141 aa)
MCRIP1MAPK regulated corepressor interacting protein 1. (123 aa)
TDRKHTudor and KH domain containing. (611 aa)
LOC100737265Small ubiquitin-related modifier 1; Ubiquitin-like protein that can be covalently attached to proteins as a monomer or a lysine-linked polymer. Covalent attachment via an isopeptide bond to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I, and can be promoted by E3 ligases such as PIAS1-4, RANBP2 or CBX4. This post- translational modification on lysine residues of proteins plays a crucial role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Involved for insta [...] (101 aa)
HNRNPLHeterogeneous nuclear ribonucleoprotein L. (454 aa)
ATXN2LAtaxin 2 like. (1080 aa)
MBNL1Muscleblind like splicing regulator 1. (436 aa)
OGFOD12-oxoglutarate and iron dependent oxygenase domain containing 1. (560 aa)
RC3H1Ring finger and CCCH-type domains 1. (1132 aa)
PUM1Pumilio RNA binding family member 1. (1189 aa)
CT55S1-like domain-containing protein. (254 aa)
EIF2S1Eukaryotic translation initiation factor 2 subunit 1; Functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S pre- initiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF- 2 must exchange with GTP by way of a reaction catalyzed [...] (315 aa)
EIF4ENIF1Eukaryotic translation initiation factor 4E nuclear import factor 1. (984 aa)
VCPTransitional endoplasmic reticulum ATPase; Necessary for the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis. Involved in the formation of the transitional endoplasmic reticulum (tER). The transfer of membranes from the endoplasmic reticulum to the Golgi apparatus occurs via 50-70 nm transition vesicles which derive from part-rough, part-smooth transitional elements of the endoplasmic reticulum (tER). Vesicle budding from the tER is an ATP-dependent process. The ternary complex containing UFD1, VCP and NPLOC4 binds ubiquitinated proteins and is neces [...] (878 aa)
G3BP1G3BP stress granule assembly factor 1. (495 aa)
HSF1Heat shock transcription factor 1. (590 aa)
TIAL1TIA1 cytotoxic granule associated RNA binding protein like 1. (395 aa)
C8orf88Chromosome 8 open reading frame 88. (122 aa)
PPP1R27Protein phosphatase 1 regulatory subunit 27. (154 aa)
ATXN2Ataxin 2. (1335 aa)
YTHDF1YTH N6-methyladenosine RNA binding protein 1. (652 aa)
FMR1Fragile X mental retardation protein 1. (632 aa)
IGF2BP2Insulin like growth factor 2 mRNA binding protein 2. (592 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (636 aa)
TIA1TIA1 cytotoxic granule associated RNA binding protein. (386 aa)
DHX36DEAH (Asp-Glu-Ala-His) box polypeptide 36 tv1. (1012 aa)
TDRD1Tudor domain containing 1. (1177 aa)
DCP1AmRNA-decapping enzyme 1A; Necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Contributes to the transactivation of target genes after stimulation by TGFB1; Belongs to the DCP1 family. (580 aa)
TOP1DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (769 aa)
ZFP36Uncharacterized protein. (372 aa)
PIWIL2Piwi like RNA-mediated gene silencing 2; Belongs to the argonaute family. (985 aa)
DDX28DEAD-box helicase 28. (540 aa)
ZFAND1AN1-type zinc finger protein 1 isoform a. (268 aa)
TDRD6Tudor domain containing 6. (2113 aa)
FXR2FMR1 autosomal homolog 2. (667 aa)
RNF135E3 ubiquitin-protein ligase RNF135 isoform 1. (423 aa)
GRB7Growth factor receptor bound protein 7. (569 aa)
ENDOVEndonuclease V. (250 aa)
LARP1La ribonucleoprotein domain family member 1. (1101 aa)
ASZ1Ankyrin repeat, SAM and basic leucine zipper domain containing 1. (477 aa)
FASTKD2FAST kinase domain-containing protein 2, mitochondrial. (689 aa)
HOXD10Homeobox protein Hox-D10. (410 aa)
F1SF34_PIGRRM domain-containing protein. (170 aa)
UBAP2Ubiquitin associated protein 2. (1133 aa)
DHX30DExH-box helicase 30. (1194 aa)
ZCCHC13Zinc finger CCHC-type containing 13. (171 aa)
KIAA0355KIAA0355. (1074 aa)
PIWIL4Piwi like RNA-mediated gene silencing 4; Belongs to the argonaute family. (906 aa)
TNRC6CTrinucleotide repeat containing adaptor 6C. (1932 aa)
TNRC6ATrinucleotide repeat containing adaptor 6A. (1989 aa)
PNRC1Proline rich nuclear receptor coactivator 1. (327 aa)
LARP1BLa ribonucleoprotein domain family member 1B. (1116 aa)
EDC3Enhancer of mRNA decapping 3. (508 aa)
TUT4Terminal uridylyl transferase 4. (1669 aa)
NANOS2Nanos C2HC-type zinc finger 2; Belongs to the nanos family. (138 aa)
BTBD1BTB/POZ domain-containing protein 1 isoform 1. (484 aa)
EDC4Enhancer of mRNA decapping 4. (1402 aa)
TDRD9Tudor domain containing 9. (1389 aa)
NRDE2NRDE-2, necessary for RNA interference, domain containing. (1166 aa)
CARHSP1Calcium regulated heat stable protein 1. (146 aa)
PABPC4LPoly(A) binding protein cytoplasmic 4 like. (341 aa)
DIS3L2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase, such as ZCCHC11/TUT4. Mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. Mediates degradation of uridylated pre-let-7 miRNAs, contributing to the maintenance of embryonic stem (ES) cells. Essential for correct mi [...] (914 aa)
CAPRIN1Cell cycle associated protein 1. (709 aa)
AGO4Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs. (878 aa)
G3BP2Ras GTPase-activating protein-binding protein 2 isoform X1. (481 aa)
ZC3H12AZinc finger CCCH-type containing 12A. (582 aa)
TDRD10RRM domain-containing protein. (387 aa)
MEX3BMex-3 RNA binding family member B. (576 aa)
CELF1CUGBP Elav-like family member 1. (551 aa)
SMG1SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. (3646 aa)
MOV10Mov10 RISC complex RNA helicase. (1093 aa)
TRUB2Mitochondrial mRNA pseudouridine synthase TRUB2 isoform 1. (349 aa)
SHFLUncharacterized protein. (286 aa)
TRIM71E3 ubiquitin-protein ligase TRIM71. (869 aa)
ARCActivity regulated cytoskeleton associated protein. (396 aa)
YTHDC2YTH domain containing 2. (1430 aa)
YTHDF3YTH domain-containing family protein 3 isoform b. (588 aa)
ZC3H12CPutative ribonuclease ZC3H12C isoform X1. (885 aa)
PATL1PAT1 homolog 1, processing body mRNA decay factor. (786 aa)
DDX6Putative ATP-dependent RNA helicase DDX6 isoform X1; Belongs to the DEAD box helicase family. (483 aa)
HABP4Intracellular hyaluronan-binding protein 4. (418 aa)
MIEF1Mitochondrial dynamics protein MID51 isoform X1. (463 aa)
TDRD5Tudor domain containing 5. (974 aa)
RPUSD4RNA pseudouridylate synthase domain-containing protein 4. (376 aa)
DDX25ATP-dependent RNA helicase DDX25 isoform 1. (483 aa)
DCP2Decapping mRNA 2. (478 aa)
NANOS3Nanos C2HC-type zinc finger 3; Belongs to the nanos family. (261 aa)
ELAVL1ELAV-like protein; Belongs to the RRM elav family. (326 aa)
BTBD2BTB/POZ domain-containing protein 2. (515 aa)
ZC3H12BZinc finger CCCH-type containing 12B. (836 aa)
DDX3XATP-dependent RNA helicase DDX3X isoform 1; Belongs to the DEAD box helicase family. (662 aa)
RPUSD3Mitochondrial mRNA pseudouridine synthase RPUSD3 isoform 1. (352 aa)
LIMD1LIM domain-containing protein 1. (671 aa)
PIWIL1Piwi like RNA-mediated gene silencing 1; Belongs to the argonaute family. (861 aa)
GRSF1G-rich RNA sequence binding factor 1. (621 aa)
MCRIP2MAPK regulated corepressor interacting protein 2. (156 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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