STRINGSTRING
LOC110258312 LOC110258312 COL11A1 COL11A1 C1QTNF7 C1QTNF7 SEPTIN7 SEPTIN7 LOC110258314 LOC110258314 COL1A1 COL1A1 COL11A2 COL11A2 LOC110258309 LOC110258309 COL5A2 COL5A2 COL4A4 COL4A4 OTOL1 OTOL1 C1QTNF2 C1QTNF2 COL2A1 COL2A1 COL16A1 COL16A1 COL3A1 COL3A1 LOC110258310 LOC110258310 COL1A2 COL1A2 COL5A3 COL5A3 COL4A2 COL4A2 LOC100522569 LOC100522569 COL5A1 COL5A1 COL10A1 COL10A1 CYTH2 CYTH2 LUM LUM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC110258312Complement C1q and tumor necrosis factor-related protein 9A. (212 aa)
COL11A1Collagen type XI alpha 1 chain. (1816 aa)
C1QTNF7C1q and TNF related 7. (311 aa)
SEPTIN7Septin 7; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (437 aa)
LOC110258314C1q domain-containing protein. (174 aa)
COL1A1Collagen type I alpha 1 chain. (1477 aa)
COL11A2Collagen type XI alpha 2 chain. (1796 aa)
LOC110258309C1q domain-containing protein. (189 aa)
COL5A2Collagen alpha-2(V) chain preproprotein. (1499 aa)
COL4A4Collagen type IV alpha 4 chain. (1691 aa)
OTOL1Otolin 1. (513 aa)
C1QTNF2C1q and TNF related 2. (396 aa)
COL2A1Collagen type II alpha 1 chain. (1486 aa)
COL16A1Collagen alpha-1(XVI) chain isoform X2. (1624 aa)
COL3A1Collagen alpha-1(III) chain preproprotein. (1471 aa)
LOC110258310C1q domain-containing protein. (248 aa)
COL1A2Fibrillar collagen NC1 domain-containing protein. (1135 aa)
COL5A3Collagen type V alpha 3 chain. (1747 aa)
COL4A2Collagen type IV alpha 2 chain. (1712 aa)
LOC100522569Complement C1q and tumor necrosis factor-related protein 9A. (333 aa)
COL5A1Fibrillar collagen NC1 domain-containing protein. (1918 aa)
COL10A1Type X collagen. (675 aa)
CYTH2Uncharacterized protein. (422 aa)
LUMLumican. (341 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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