(3 nodes) Pseudouridine synthase, RsuA/RluA-like network (Sus scrofa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPUSD1	RNA pseudouridine synthase domain containing 1. (319 aa)
	RPUSD4	RNA pseudouridylate synthase domain-containing protein 4. (376 aa)
	RPUSD3	Mitochondrial mRNA pseudouridine synthase RPUSD3 isoform 1. (352 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPUSD1	RPUSD3	ENSSSCP00000008544	ENSSSCP00000012313	RNA pseudouridine synthase domain containing 1.	Mitochondrial mRNA pseudouridine synthase RPUSD3 isoform 1.	0.578
RPUSD3	RPUSD1	ENSSSCP00000012313	ENSSSCP00000008544	Mitochondrial mRNA pseudouridine synthase RPUSD3 isoform 1.	RNA pseudouridine synthase domain containing 1.	0.578
RPUSD3	RPUSD4	ENSSSCP00000012313	ENSSSCP00000016154	Mitochondrial mRNA pseudouridine synthase RPUSD3 isoform 1.	RNA pseudouridylate synthase domain-containing protein 4.	0.507
RPUSD4	RPUSD3	ENSSSCP00000016154	ENSSSCP00000012313	RNA pseudouridylate synthase domain-containing protein 4.	Mitochondrial mRNA pseudouridine synthase RPUSD3 isoform 1.	0.507