(12 nodes) Pseudouridine synthase, catalytic domain superfamily network (Sus scrofa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PUS3	tRNA pseudouridine(38/39) synthase isoform 1. (479 aa)
	PUS7L	Pseudouridine synthase 7 like. (702 aa)
	TRUB1	TruB pseudouridine synthase family member 1. (343 aa)
	TRUB2	Mitochondrial mRNA pseudouridine synthase TRUB2 isoform 1. (349 aa)
	PUS1	Pseudouridine synthase 1. (433 aa)
	DKC1	Uncharacterized protein. (521 aa)
	RPUSD3	Mitochondrial mRNA pseudouridine synthase RPUSD3 isoform 1. (352 aa)
	PUS10	Pseudouridine synthase 10. (531 aa)
	PUS7	Pseudouridine synthase 7. (816 aa)
	RPUSD4	RNA pseudouridylate synthase domain-containing protein 4. (376 aa)
	RPUSD1	RNA pseudouridine synthase domain containing 1. (319 aa)
	PUSL1	tRNA pseudouridine synthase. (435 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DKC1	PUS1	ENSSSCP00000013633	ENSSSCP00000051131	Uncharacterized protein.	Pseudouridine synthase 1.	0.776
DKC1	PUS10	ENSSSCP00000013633	ENSSSCP00000008951	Uncharacterized protein.	Pseudouridine synthase 10.	0.427
DKC1	PUS3	ENSSSCP00000013633	ENSSSCP00000016143	Uncharacterized protein.	tRNA pseudouridine(38/39) synthase isoform 1.	0.636
DKC1	PUS7	ENSSSCP00000013633	ENSSSCP00000016360	Uncharacterized protein.	Pseudouridine synthase 7.	0.632
DKC1	PUSL1	ENSSSCP00000013633	ENSSSCP00000003621	Uncharacterized protein.	tRNA pseudouridine synthase.	0.559
DKC1	RPUSD3	ENSSSCP00000013633	ENSSSCP00000012313	Uncharacterized protein.	Mitochondrial mRNA pseudouridine synthase RPUSD3 isoform 1.	0.403
DKC1	RPUSD4	ENSSSCP00000013633	ENSSSCP00000016154	Uncharacterized protein.	RNA pseudouridylate synthase domain-containing protein 4.	0.401
DKC1	TRUB1	ENSSSCP00000013633	ENSSSCP00000048348	Uncharacterized protein.	TruB pseudouridine synthase family member 1.	0.402
PUS1	DKC1	ENSSSCP00000051131	ENSSSCP00000013633	Pseudouridine synthase 1.	Uncharacterized protein.	0.776
PUS1	PUS10	ENSSSCP00000051131	ENSSSCP00000008951	Pseudouridine synthase 1.	Pseudouridine synthase 10.	0.586
PUS1	PUS3	ENSSSCP00000051131	ENSSSCP00000016143	Pseudouridine synthase 1.	tRNA pseudouridine(38/39) synthase isoform 1.	0.553
PUS1	PUS7	ENSSSCP00000051131	ENSSSCP00000016360	Pseudouridine synthase 1.	Pseudouridine synthase 7.	0.724
PUS1	PUS7L	ENSSSCP00000051131	ENSSSCP00000036173	Pseudouridine synthase 1.	Pseudouridine synthase 7 like.	0.712
PUS1	RPUSD1	ENSSSCP00000051131	ENSSSCP00000008544	Pseudouridine synthase 1.	RNA pseudouridine synthase domain containing 1.	0.623
PUS1	RPUSD3	ENSSSCP00000051131	ENSSSCP00000012313	Pseudouridine synthase 1.	Mitochondrial mRNA pseudouridine synthase RPUSD3 isoform 1.	0.786
PUS1	RPUSD4	ENSSSCP00000051131	ENSSSCP00000016154	Pseudouridine synthase 1.	RNA pseudouridylate synthase domain-containing protein 4.	0.738
PUS1	TRUB1	ENSSSCP00000051131	ENSSSCP00000048348	Pseudouridine synthase 1.	TruB pseudouridine synthase family member 1.	0.779
PUS1	TRUB2	ENSSSCP00000051131	ENSSSCP00000050883	Pseudouridine synthase 1.	Mitochondrial mRNA pseudouridine synthase TRUB2 isoform 1.	0.853
PUS10	DKC1	ENSSSCP00000008951	ENSSSCP00000013633	Pseudouridine synthase 10.	Uncharacterized protein.	0.427
PUS10	PUS1	ENSSSCP00000008951	ENSSSCP00000051131	Pseudouridine synthase 10.	Pseudouridine synthase 1.	0.586