3 items (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HLA-DRA	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family. (252 aa)
	SLA-DRB1	Ig-like domain-containing protein. (307 aa)
	SLA-DQB1	SLA class II histocompatibility antigen, DQ haplotype C beta chain. (271 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HLA-DRA	SLA-DQB1	ENSSSCP00000001567	ENSSSCP00000062346	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	SLA class II histocompatibility antigen, DQ haplotype C beta chain.	0.878
HLA-DRA	SLA-DRB1	ENSSSCP00000001567	ENSSSCP00000055121	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	Ig-like domain-containing protein.	0.936
SLA-DQB1	HLA-DRA	ENSSSCP00000062346	ENSSSCP00000001567	SLA class II histocompatibility antigen, DQ haplotype C beta chain.	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	0.878
SLA-DQB1	SLA-DRB1	ENSSSCP00000062346	ENSSSCP00000055121	SLA class II histocompatibility antigen, DQ haplotype C beta chain.	Ig-like domain-containing protein.	0.680
SLA-DRB1	HLA-DRA	ENSSSCP00000055121	ENSSSCP00000001567	Ig-like domain-containing protein.	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	0.936
SLA-DRB1	SLA-DQB1	ENSSSCP00000055121	ENSSSCP00000062346	Ig-like domain-containing protein.	SLA class II histocompatibility antigen, DQ haplotype C beta chain.	0.680