STRINGSTRING
FYTTD1 FYTTD1 SARNP SARNP MAGOHB MAGOHB SRSF3 SRSF3 MAGOH MAGOH GLE1 GLE1 NXT1 NXT1 RNPS1 RNPS1 NUP54 NUP54 SRSF9 SRSF9 NUP210 NUP210 LOC100153087 LOC100153087 UPF3B UPF3B NUP160 NUP160 NUP98 NUP98 F1SRM6_PIG F1SRM6_PIG SLU7 SLU7 EIF4A3 EIF4A3 NUP85 NUP85 CASC3 CASC3 NUP205 NUP205 RBM8A RBM8A NCBP2 NCBP2 RANBP2 RANBP2 ZC3H11A ZC3H11A RAE1 RAE1 DDX39B DDX39B TPR TPR NUP88 NUP88 NUP214 NUP214 CDC40 CDC40 SRSF5 SRSF5 U2AF1L4 U2AF1L4 NUP155 NUP155 SRSF2 SRSF2 NUP93 NUP93 POM121C POM121C NUP133 NUP133 U2AF2 U2AF2 THOC5 THOC5 SRSF7 SRSF7 SRRM1 SRRM1 CHTOP CHTOP NUP62 NUP62 THOC6 THOC6 THOC7 THOC7 THOC2 THOC2 DHX38 DHX38 NUP37 NUP37 SRSF1 SRSF1 NUP43 NUP43 DDX39A DDX39A NUP188 NUP188 NXF1 NXF1 NUP107 NUP107 NUP42 NUP42 NUP153 NUP153 AAAS AAAS NUP35 NUP35 NCBP1 NCBP1 NDC1 NDC1 NPAP1 NPAP1 THOC1 THOC1 POLDIP3 POLDIP3 ALYREF ALYREF SEC13 SEC13 THOC3 THOC3 NUP58 NUP58
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
FYTTD1Forty-two-three domain containing 1. (317 aa)
SARNPSAP domain containing ribonucleoprotein. (238 aa)
MAGOHBMago homolog B, exon junction complex subunit. (148 aa)
SRSF3Serine and arginine rich splicing factor 3. (164 aa)
MAGOHMago homolog, exon junction complex subunit. (146 aa)
GLE1GLE1 RNA export mediator. (698 aa)
NXT1Nuclear transport factor 2 like export factor 1. (140 aa)
RNPS1RNA binding protein with serine rich domain 1. (341 aa)
NUP54Nucleoporin 54. (564 aa)
SRSF9Uncharacterized protein. (221 aa)
NUP210Nucleoporin 210. (1946 aa)
LOC100153087Uncharacterized protein. (614 aa)
UPF3BUPF3B regulator of nonsense mediated mRNA decay. (483 aa)
NUP160Nucleoporin 160. (1437 aa)
NUP98Nucleoporin 98. (1753 aa)
F1SRM6_PIGUncharacterized protein. (954 aa)
SLU7Pre-mRNA-splicing factor SLU7 isoform X1. (586 aa)
EIF4A3Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...] (488 aa)
NUP85Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (684 aa)
CASC3CASC3 exon junction complex subunit. (633 aa)
NUP205Nucleoporin 205. (2026 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
RANBP2RAN binding protein 2. (3233 aa)
ZC3H11AZinc finger CCCH domain-containing protein 11A isoform X1. (816 aa)
RAE1mRNA export factor; Plays a role in mitotic bipolar spindle formation. Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton. (368 aa)
DDX39BSpliceosome RNA helicase DDX39B; Involved in nuclear export of spliced and unspliced mRNA. Assembling component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export to the cytoplasm via the TAP/NFX1 pat [...] (467 aa)
TPRTranslocated promoter region, nuclear basket protein. (2518 aa)
NUP88Nucleoporin 88. (739 aa)
NUP214Nucleoporin 214. (2016 aa)
CDC40Pre-mRNA-processing factor 17. (579 aa)
SRSF5Serine and arginine rich splicing factor 5. (271 aa)
U2AF1L4Splicing factor U2AF 35 kDa subunit-like protein isoform 2. (247 aa)
NUP155Nucleoporin 155. (1391 aa)
SRSF2Serine/arginine-rich splicing factor 2; Necessary for the splicing of pre-mRNA. It is required for formation of the earliest ATP-dependent splicing complex and interacts with spliceosomal components bound to both the 5'- and 3'-splice sites during spliceosome assembly. It also is required for ATP-dependent interactions of both U1 and U2 snRNPs with pre-mRNA. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Binds to purine-rich RNA sequences, either 5'-AGSAGAGTA-3' (S=C or G) or 5 [...] (221 aa)
NUP93Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (797 aa)
POM121CUncharacterized protein. (1193 aa)
NUP133Nucleoporin 133. (1160 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (475 aa)
THOC5THO complex subunit 5 homolog isoform X1. (694 aa)
SRSF7Serine/arginine-rich splicing factor 7 isoform 1. (238 aa)
SRRM1Serine and arginine repetitive matrix 1. (968 aa)
CHTOPChromatin target of PRMT1. (277 aa)
NUP62Nucleoporin 62. (478 aa)
THOC6THO complex subunit 6 homolog isoform 1. (406 aa)
THOC7THO complex subunit 7 homolog isoform X1. (233 aa)
THOC2THO complex 2. (1588 aa)
DHX38DEAH-box helicase 38. (1325 aa)
NUP37Nucleoporin Nup37. (333 aa)
SRSF1Serine/arginine-rich splicing factor 1; Plays a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Can stimulate binding of U1 snRNP to a 5'-splice site- containing pre-mRNA. Binds to purine-rich RNA sequences, either the octamer, 5'-RGAAGAAC-3' (r=A or G) or the decamers, AGGACAGAGC/AGGACGAAGC. Binds preferentially to the 5'-CGAGGCG-3' motif in vitro. Three copies of the octame [...] (253 aa)
NUP43Nucleoporin Nup43 isoform X2. (380 aa)
DDX39ADExD-box helicase 39A. (452 aa)
NUP188Nucleoporin 188. (1769 aa)
NXF1Nuclear RNA export factor 1. (721 aa)
NUP107Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (925 aa)
NUP42Nucleoporin-like protein 2. (418 aa)
NUP153Nucleoporin 153. (1473 aa)
AAASAladin WD repeat nucleoporin. (554 aa)
NUP35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (327 aa)
NCBP1Nuclear cap binding protein subunit 1. (1117 aa)
NDC1NDC1 transmembrane nucleoporin. (757 aa)
NPAP1Uncharacterized protein. (1181 aa)
THOC1THO complex 1. (702 aa)
POLDIP3Polymerase delta-interacting protein 3 isoform X1. (420 aa)
ALYREFAly/REF export factor. (348 aa)
SEC13SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (341 aa)
THOC3THO complex 3. (362 aa)
NUP58Nucleoporin 58. (583 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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