(25 nodes) Peroxisomal lipid metabolism network (Sus scrofa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SLC25A17	Solute carrier family 25 member 17; Belongs to the mitochondrial carrier (TC 2.A.29) family. (329 aa)
	ECI2	Enoyl-CoA delta isomerase 2. (415 aa)
	ACOT6	Uncharacterized protein. (421 aa)
	SLC27A2	Solute carrier family 27 (Fatty acid transporter) member 2. (620 aa)
	ACAA1	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family. (432 aa)
	ABCD1	ATP binding cassette subfamily D member 1. (732 aa)
	PECR	Peroxisomal trans-2-enoyl-CoA reductase. (303 aa)
	ACOT8	Acyl-coenzyme A thioesterase 8. (317 aa)
	EHHADH	Enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. (731 aa)
	ACOX1	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (660 aa)
	PHYH	Phytanoyl-CoA 2-hydroxylase. (334 aa)
	CRAT	Carnitine O-acetyltransferase; Belongs to the carnitine/choline acetyltransferase family. (745 aa)
	ACOX2	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (681 aa)
	HACL1	2-hydroxyacyl-CoA lyase 1; Belongs to the TPP enzyme family. (600 aa)
	ACOXL	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (708 aa)
	ACOT4	Acyl-CoA thioesterase 4. (507 aa)
	CROT	Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family. (612 aa)
	ALDH3A2	Aldehyde dehydrogenase 3 family member A2; Belongs to the aldehyde dehydrogenase family. (578 aa)
	ACBD4	Acyl-CoA binding domain containing 4. (317 aa)
	MLYCD	Malonyl-CoA decarboxylase. (499 aa)
	DECR2	Peroxisomal 2,4-dienoyl-CoA reductase. (320 aa)
	HAO2	Hydroxyacid oxidase 2 isoform 1. (353 aa)
	ACBD5	Acyl-CoA binding domain containing 5. (596 aa)
	ACOX3	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (720 aa)
	NUDT19	Nudix hydrolase 19. (322 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCD1	ACBD5	ENSSSCP00000013588	ENSSSCP00000059214	ATP binding cassette subfamily D member 1.	Acyl-CoA binding domain containing 5.	0.541
ABCD1	ALDH3A2	ENSSSCP00000013588	ENSSSCP00000053449	ATP binding cassette subfamily D member 1.	Aldehyde dehydrogenase 3 family member A2; Belongs to the aldehyde dehydrogenase family.	0.544
ABCD1	SLC25A17	ENSSSCP00000013588	ENSSSCP00000000077	ATP binding cassette subfamily D member 1.	Solute carrier family 25 member 17; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.630
ACAA1	ACBD4	ENSSSCP00000011995	ENSSSCP00000056399	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-CoA binding domain containing 4.	0.516
ACAA1	ACBD5	ENSSSCP00000011995	ENSSSCP00000059214	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-CoA binding domain containing 5.	0.548
ACAA1	ACOX1	ENSSSCP00000011995	ENSSSCP00000034512	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.988
ACAA1	ACOX2	ENSSSCP00000011995	ENSSSCP00000043411	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.879
ACAA1	ACOX3	ENSSSCP00000011995	ENSSSCP00000062930	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.971
ACAA1	ACOXL	ENSSSCP00000011995	ENSSSCP00000045687	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.652
ACAA1	ALDH3A2	ENSSSCP00000011995	ENSSSCP00000053449	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Aldehyde dehydrogenase 3 family member A2; Belongs to the aldehyde dehydrogenase family.	0.581
ACAA1	CRAT	ENSSSCP00000011995	ENSSSCP00000038068	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Carnitine O-acetyltransferase; Belongs to the carnitine/choline acetyltransferase family.	0.523
ACAA1	CROT	ENSSSCP00000011995	ENSSSCP00000052218	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family.	0.512
ACAA1	DECR2	ENSSSCP00000011995	ENSSSCP00000058913	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Peroxisomal 2,4-dienoyl-CoA reductase.	0.503
ACAA1	ECI2	ENSSSCP00000011995	ENSSSCP00000001070	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Enoyl-CoA delta isomerase 2.	0.980
ACAA1	EHHADH	ENSSSCP00000011995	ENSSSCP00000024105	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.991
ACAA1	HAO2	ENSSSCP00000011995	ENSSSCP00000058936	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Hydroxyacid oxidase 2 isoform 1.	0.626
ACAA1	PECR	ENSSSCP00000011995	ENSSSCP00000020415	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Peroxisomal trans-2-enoyl-CoA reductase.	0.626
ACAA1	PHYH	ENSSSCP00000011995	ENSSSCP00000036917	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Phytanoyl-CoA 2-hydroxylase.	0.713
ACBD4	ACAA1	ENSSSCP00000056399	ENSSSCP00000011995	Acyl-CoA binding domain containing 4.	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.516
ACBD4	ACOX1	ENSSSCP00000056399	ENSSSCP00000034512	Acyl-CoA binding domain containing 4.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.537