STRINGSTRING
POLR2F POLR2F IPO8 IPO8 LOC100152135 LOC100152135 LOC100152878 LOC100152878 H2AC20 H2AC20 LOC102159655 LOC102159655 NUP54 NUP54 H2AFZ H2AFZ LOC100155267 LOC100155267 NUP210 NUP210 NUP160 NUP160 NUP98 NUP98 F1SRM6_PIG F1SRM6_PIG LOC100521680 LOC100521680 NUP85 NUP85 I3LAJ9_PIG I3LAJ9_PIG NUP205 NUP205 HIST1H2BD HIST1H2BD POLR2B POLR2B POLR2A POLR2A LOC100158121 LOC100158121 RANBP2 RANBP2 POLR2K POLR2K POLR2E POLR2E LOC100621389 LOC100621389 RAE1 RAE1 TPR TPR NUP88 NUP88 A0A286ZRB3_PIG A0A286ZRB3_PIG AGO1 AGO1 NUP214 NUP214 TNRC6A TNRC6A NUP155 NUP155 H2BC11 H2BC11 NUP93 NUP93 POM121C POM121C POLR2D POLR2D NUP133 NUP133 POLR2I POLR2I H2AJ H2AJ H2BU1 H2BU1 NUP62 NUP62 H2AC6 H2AC6 HIST1H3E HIST1H3E LOC100620620 LOC100620620 H2BC21 H2BC21 NUP37 NUP37 NUP43 NUP43 NUP188 NUP188 AGO2 AGO2 H2AX H2AX NUP107 NUP107 NUP42 NUP42 NUP153 NUP153 AAAS AAAS NUP35 NUP35 POLR2J POLR2J NDC1 NDC1 NPAP1 NPAP1 POLR2G POLR2G POLR2H POLR2H RAN RAN H2AZ2 H2AZ2 SEC13 SEC13 NUP58 NUP58
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
POLR2FRNA polymerase II subunit F. (127 aa)
IPO8Importin 8. (1037 aa)
LOC100152135Histone H2B; Belongs to the histone H2B family. (127 aa)
LOC100152878Histone H2B; Belongs to the histone H2B family. (127 aa)
H2AC20Histone H2A; Belongs to the histone H2A family. (129 aa)
LOC102159655Histone H2A; Belongs to the histone H2A family. (130 aa)
NUP54Nucleoporin 54. (564 aa)
H2AFZHistone H2A; Belongs to the histone H2A family. (128 aa)
LOC100155267Histone domain-containing protein; Belongs to the histone H2B family. (126 aa)
NUP210Nucleoporin 210. (1946 aa)
NUP160Nucleoporin 160. (1437 aa)
NUP98Nucleoporin 98. (1753 aa)
F1SRM6_PIGUncharacterized protein. (954 aa)
LOC100521680Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] (136 aa)
NUP85Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (684 aa)
I3LAJ9_PIGHistone H2B; Belongs to the histone H2B family. (168 aa)
NUP205Nucleoporin 205. (2026 aa)
HIST1H2BDHistone H2B; Belongs to the histone H2B family. (126 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1251 aa)
POLR2ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1942 aa)
LOC100158121Histone H2A; Belongs to the histone H2A family. (130 aa)
RANBP2RAN binding protein 2. (3233 aa)
POLR2KRNA polymerase II subunit K. (58 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
LOC100621389Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
RAE1mRNA export factor; Plays a role in mitotic bipolar spindle formation. Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton. (368 aa)
TPRTranslocated promoter region, nuclear basket protein. (2518 aa)
NUP88Nucleoporin 88. (739 aa)
A0A286ZRB3_PIGHistone domain-containing protein. (130 aa)
AGO1Argonaute RISC component 1; Belongs to the argonaute family. (1168 aa)
NUP214Nucleoporin 214. (2016 aa)
TNRC6ATrinucleotide repeat containing adaptor 6A. (1989 aa)
NUP155Nucleoporin 155. (1391 aa)
H2BC11Histone H2B; Belongs to the histone H2B family. (149 aa)
NUP93Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (797 aa)
POM121CUncharacterized protein. (1193 aa)
POLR2DRNA polymerase II subunit D. (184 aa)
NUP133Nucleoporin 133. (1160 aa)
POLR2IDNA-directed RNA polymerase II subunit RPB9; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB9 is part of the upper jaw surrounding the central large cleft and thought to grab the incoming DNA template (By similarity). (125 aa)
H2AJHistone H2A; Belongs to the histone H2A family. (129 aa)
H2BU1Histone H2B; Belongs to the histone H2B family. (126 aa)
NUP62Nucleoporin 62. (478 aa)
H2AC6Histone H2A; Belongs to the histone H2A family. (145 aa)
HIST1H3EHistone H3; Belongs to the histone H3 family. (136 aa)
LOC100620620Histone H2A; Belongs to the histone H2A family. (113 aa)
H2BC21Histone H2B; Belongs to the histone H2B family. (126 aa)
NUP37Nucleoporin Nup37. (333 aa)
NUP43Nucleoporin Nup43 isoform X2. (380 aa)
NUP188Nucleoporin 188. (1769 aa)
AGO2Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] (874 aa)
H2AXHistone H2A; Belongs to the histone H2A family. (143 aa)
NUP107Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (925 aa)
NUP42Nucleoporin-like protein 2. (418 aa)
NUP153Nucleoporin 153. (1473 aa)
AAASAladin WD repeat nucleoporin. (554 aa)
NUP35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (327 aa)
POLR2JRNA_pol_L_2 domain-containing protein. (164 aa)
NDC1NDC1 transmembrane nucleoporin. (757 aa)
NPAP1Uncharacterized protein. (1181 aa)
POLR2GRNA polymerase II subunit G. (231 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (153 aa)
RANGTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (222 aa)
H2AZ2Histone H2A; Belongs to the histone H2A family. (145 aa)
SEC13SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (341 aa)
NUP58Nucleoporin 58. (583 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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