STRINGSTRING
SNU13 SNU13 UTP20 UTP20 RRP36 RRP36 IMP3 IMP3 EXOSC6 EXOSC6 EXOSC5 EXOSC5 EXOSC10 EXOSC10 UTP11 UTP11 MPHOSPH10 MPHOSPH10 RPL10L RPL10L RPL36AL RPL36AL RCL1 RCL1 EXOSC3 EXOSC3 EXOSC4 EXOSC4 DCAF13 DCAF13 RPL30 RPL30 ISG20L2 ISG20L2 WDR3 WDR3 NOP56 NOP56 NOP14 NOP14 RPL34 RPL34 NOC4L NOC4L HEATR1 HEATR1 NOL6 NOL6 EXOSC7 EXOSC7 LAS1L LAS1L UTP14A UTP14A WDR18 WDR18 KXD1 KXD1 UTP15 UTP15 UTP25 UTP25 IMP4 IMP4 WDR75 WDR75 NCL NCL MTREX MTREX RPL26L1 RPL26L1 NOL11 NOL11 RPL19 RPL19 UTP18 UTP18 FBL FBL RPL18 RPL18 RPL26 RPL26 I3L8K3_PIG I3L8K3_PIG LOC100519675 LOC100519675 NOL9 NOL9 NOP58 NOP58 UTP3 UTP3 WDR43 WDR43 RPL27 RPL27 DDX52 DDX52 DDX49 DDX49 BMS1 BMS1 EMG1 EMG1 RRP9 RRP9 RPL13 RPL13 RPL39 RPL39 A0A286ZJ84_PIG A0A286ZJ84_PIG RPL23A RPL23A A0A286ZN03_PIG A0A286ZN03_PIG XRN2 XRN2 WDR36 WDR36 EXOSC9 EXOSC9 RPL10 RPL10 RPL24 RPL24 RPL23 RPL23 DDX47 DDX47 RPL31 RPL31 RPLP0 RPLP0 RPL7 RPL7 RPS7 RPS7 RPL22 RPL22 UTP6 UTP6 RPL38 RPL38 MPHOSPH6 MPHOSPH6 RPL22L1 RPL22L1 ERI1 ERI1 RPL29 RPL29 RPL18A RPL18A FCF1 FCF1 SENP3 SENP3 RPS2 RPS2 LOC100624650 LOC100624650 A0A287AZ41_PIG A0A287AZ41_PIG RPL28 RPL28 TBL3 TBL3 RPL6 RPL6 KRR1 KRR1 RPL32 RPL32 C1D C1D WDR46 WDR46 RPL21 RPL21 RPL37 RPL37 EXOSC8 EXOSC8 DIS3 DIS3 RPL12 RPL12 RPL36A-HNRNPH2 RPL36A-HNRNPH2 A0A5G2QBT0_PIG A0A5G2QBT0_PIG RPL35 RPL35 UTP4 UTP4 RRP7A RRP7A PWP2 PWP2 RPL37A RPL37A TEX10 TEX10 RPL3L RPL3L PELP1 PELP1 EXOSC1 EXOSC1 RPL8 RPL8 DHX37 DHX37
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (132 aa)
UTP20UTP20 small subunit processome component. (2781 aa)
RRP36Novel protein similar to vertebrate chromosome 6 open reading frame 153 (C6orf153). (246 aa)
IMP3S4 RNA-binding domain-containing protein. (184 aa)
EXOSC6Exosome component 6. (272 aa)
EXOSC5Exosome component 5. (299 aa)
EXOSC10Exosome component 10. (869 aa)
UTP11U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (253 aa)
MPHOSPH10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (680 aa)
RPL10LRibosomal protein L10 like. (214 aa)
RPL36AL60S ribosomal protein L36a. (299 aa)
RCL1RNA terminal phosphate cyclase like 1. (450 aa)
EXOSC3Exosome complex component RRP40 isoform 1. (275 aa)
EXOSC4Exosome complex component RRP41. (245 aa)
DCAF13DDB1 and CUL4 associated factor 13. (444 aa)
RPL30Ribosomal_L7Ae domain-containing protein. (147 aa)
ISG20L2Interferon-stimulated 20 kDa exonuclease-like 2 isoform X1. (343 aa)
WDR3WD repeat domain 3. (943 aa)
NOP56NOP56 ribonucleoprotein. (596 aa)
NOP14NOP14 nucleolar protein. (852 aa)
RPL3460S ribosomal protein L34; Component of the large ribosomal subunit. (117 aa)
NOC4LNucleolar complex associated 4 homolog. (543 aa)
HEATR1HEAT repeat containing 1. (2141 aa)
NOL6Nucleolar protein 6. (1145 aa)
EXOSC7Uncharacterized protein. (349 aa)
LAS1LLAS1 like, ribosome biogenesis factor. (721 aa)
UTP14AUncharacterized protein. (773 aa)
WDR18WD repeat-containing protein 18. (432 aa)
KXD1Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be in [...] (305 aa)
UTP15Uncharacterized protein. (518 aa)
UTP25UTP25 small subunit processor component. (760 aa)
IMP4U3 small nucleolar ribonucleoprotein IMP4 isoform a. (291 aa)
WDR75WD repeat-containing protein 75 isoform 1. (831 aa)
NCLZinc finger protein Pegasus. (724 aa)
MTREXExosome RNA helicase MTR4. (1042 aa)
RPL26L160S ribosomal protein L26-like 1 isoform X1. (145 aa)
NOL11Nucleolar protein 11. (880 aa)
RPL19Ribosomal protein L19. (250 aa)
UTP18U3 small nucleolar RNA-associated protein 18 homolog. (572 aa)
FBLFibrillarin. (321 aa)
RPL1860S ribosomal protein L18; Component of the large ribosomal subunit. (219 aa)
RPL26Ribosomal protein L26. (145 aa)
I3L8K3_PIGUncharacterized protein. (170 aa)
LOC100519675Uncharacterized protein. (139 aa)
NOL9Polynucleotide 5'-hydroxyl-kinase NOL9. (694 aa)
NOP58NOP58 ribonucleoprotein. (546 aa)
UTP3Sas10 domain-containing protein. (474 aa)
WDR43WD repeat-containing protein 43. (681 aa)
RPL2760S ribosomal protein L27; Component of the large ribosomal subunit. Required for proper rRNA processing and maturation of 28S and 5.8S rRNAs (By similarity). (136 aa)
DDX52Putative ATP-dependent RNA helicase DDX52 isoform 1. (599 aa)
DDX49DEAD-box helicase 49; Belongs to the DEAD box helicase family. (476 aa)
BMS1BMS1 ribosome biogenesis factor. (1284 aa)
EMG1Ribosomal RNA small subunit methyltransferase NEP1 isoform 1. (244 aa)
RRP9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (475 aa)
RPL1360S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
RPL39Uncharacterized protein. (51 aa)
A0A286ZJ84_PIGUncharacterized protein. (101 aa)
RPL23ARibosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (156 aa)
A0A286ZN03_PIGRibosomal_L5 domain-containing protein. (174 aa)
XRN25'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (930 aa)
WDR36WD repeat domain 36. (895 aa)
EXOSC9Exosome component 9. (455 aa)
RPL1060S ribosomal protein L10; Component of the large ribosomal subunit. Plays a role in the formation of actively translating ribosomes. May play a role in the embryonic brain development. (329 aa)
RPL24Ribosomal protein L24. (217 aa)
RPL2360S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
DDX47Putative ATP-dependent RNA helicase DDX47; Belongs to the DEAD box helicase family. (493 aa)
RPL3160S ribosomal protein L31; Belongs to the eukaryotic ribosomal protein eL31 family. (129 aa)
RPLP060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (322 aa)
RPL7Uncharacterized protein. (249 aa)
RPS740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
RPL2260S ribosomal protein L22. (69 aa)
UTP6UTP6 small subunit processome component. (598 aa)
RPL38Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (81 aa)
MPHOSPH6M-phase phosphoprotein 6. (176 aa)
RPL22L1Uncharacterized protein. (120 aa)
ERI13'-5' exoribonuclease 1 isoform X1. (349 aa)
RPL2960S ribosomal protein L29; Component of the large ribosomal subunit. Belongs to the eukaryotic ribosomal protein eL29 family. (255 aa)
RPL18A60S ribosomal protein L18a. (224 aa)
FCF1FCF1 rRNA-processing protein. (198 aa)
SENP3Sentrin-specific protease 3. (574 aa)
RPS2Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (293 aa)
LOC100624650Uncharacterized protein. (192 aa)
A0A287AZ41_PIGUncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (146 aa)
RPL28Ribosomal protein L28. (137 aa)
TBL3Transducin beta like 3. (889 aa)
RPL660S ribosomal protein L6; Component of the large ribosomal subunit. (271 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (375 aa)
RPL3260S ribosomal protein L32; Belongs to the eukaryotic ribosomal protein eL32 family. (135 aa)
C1DUncharacterized protein. (141 aa)
WDR46WD repeat-containing protein 46 isoform 1. (656 aa)
RPL2160S ribosomal protein L21; Component of the large ribosomal subunit. (160 aa)
RPL37Ribosomal protein L37; Binds to the 23S rRNA. (100 aa)
EXOSC8Exosome component 8. (281 aa)
DIS3DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (958 aa)
RPL12Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (217 aa)
RPL36A-HNRNPH2RPL36A-HNRNPH2 readthrough; Belongs to the eukaryotic ribosomal protein eL42 family. (154 aa)
A0A5G2QBT0_PIGRibosomal_L7Ae domain-containing protein. (300 aa)
RPL3560S ribosomal protein L35; Component of the large ribosomal subunit. Belongs to the universal ribosomal protein uL29 family. (123 aa)
UTP4U3 small nucleolar RNA-associated protein 4 homolog isoform 1. (686 aa)
RRP7ARibosomal RNA processing 7 homolog A. (412 aa)
PWP2Uncharacterized protein. (1096 aa)
RPL37AUncharacterized protein. (107 aa)
TEX10Testis expressed 10. (971 aa)
RPL3LRibosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family. (441 aa)
PELP1Proline, glutamate and leucine rich protein 1. (1108 aa)
EXOSC1Exosome component 1. (255 aa)
RPL8Ribosomal_L2_C domain-containing protein. (319 aa)
DHX37DEAH-box helicase 37. (1186 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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