STRINGSTRING
POLR2F POLR2F LOC100152135 LOC100152135 LOC100152878 LOC100152878 TAF1C TAF1C MNAT1 MNAT1 POLR1E POLR1E H2AC20 H2AC20 LOC102159655 LOC102159655 POLR1A POLR1A TAF1B TAF1B H2AFZ H2AFZ LOC100155267 LOC100155267 GTF2H1 GTF2H1 LOC100521680 LOC100521680 I3LAJ9_PIG I3LAJ9_PIG HIST1H2BD HIST1H2BD LOC100158121 LOC100158121 POLR2K POLR2K TWISTNB TWISTNB POLR2E POLR2E LOC100621389 LOC100621389 TAF1D TAF1D A0A286ZRB3_PIG A0A286ZRB3_PIG ERCC2 ERCC2 CCNH CCNH H2BC11 H2BC11 GTF2H2 GTF2H2 POLR1B POLR1B TAF1A TAF1A GTF2H3 GTF2H3 H2AJ H2AJ ERCC3 ERCC3 H2BU1 H2BU1 CBX3 CBX3 H2AC6 H2AC6 HIST1H3E HIST1H3E LOC100620620 LOC100620620 H2BC21 H2BC21 RRN3 RRN3 ZNRD1 ZNRD1 CD3EAP CD3EAP UBTF UBTF H2AX H2AX POLR1C POLR1C POLR2H POLR2H GTF2H5 GTF2H5 H2AZ2 H2AZ2 CDK7 CDK7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
POLR2FRNA polymerase II subunit F. (127 aa)
LOC100152135Histone H2B; Belongs to the histone H2B family. (127 aa)
LOC100152878Histone H2B; Belongs to the histone H2B family. (127 aa)
TAF1CTATA-box binding protein associated factor, RNA polymerase I subunit C. (908 aa)
MNAT1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
POLR1EDNA-directed RNA polymerase I subunit RPA49 isoform 1. (419 aa)
H2AC20Histone H2A; Belongs to the histone H2A family. (129 aa)
LOC102159655Histone H2A; Belongs to the histone H2A family. (130 aa)
POLR1ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1720 aa)
TAF1BTATA box-binding protein-associated factor RNA polymerase I subunit B isoform a. (589 aa)
H2AFZHistone H2A; Belongs to the histone H2A family. (128 aa)
LOC100155267Histone domain-containing protein; Belongs to the histone H2B family. (126 aa)
GTF2H1General transcription factor IIH subunit 1. (674 aa)
LOC100521680Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] (136 aa)
I3LAJ9_PIGHistone H2B; Belongs to the histone H2B family. (168 aa)
HIST1H2BDHistone H2B; Belongs to the histone H2B family. (126 aa)
LOC100158121Histone H2A; Belongs to the histone H2A family. (130 aa)
POLR2KRNA polymerase II subunit K. (58 aa)
TWISTNBSHS2_Rpb7-N domain-containing protein. (335 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
LOC100621389Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
TAF1DTATA-box binding protein associated factor, RNA polymerase I subunit D. (287 aa)
A0A286ZRB3_PIGHistone domain-containing protein. (130 aa)
ERCC2General transcription and DNA repair factor IIH helicase subunit XPD isoform 1. (763 aa)
CCNHCyclin-H isoform 1; Belongs to the cyclin family. (328 aa)
H2BC11Histone H2B; Belongs to the histone H2B family. (149 aa)
GTF2H2VWFA domain-containing protein. (613 aa)
POLR1BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1135 aa)
TAF1ATATA box-binding protein-associated factor RNA polymerase I subunit A isoform 1. (477 aa)
GTF2H3General transcription factor IIH subunit 3 isoform a. (321 aa)
H2AJHistone H2A; Belongs to the histone H2A family. (129 aa)
ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit. (801 aa)
H2BU1Histone H2B; Belongs to the histone H2B family. (126 aa)
CBX3Chromobox protein homolog 3 isoform X1. (183 aa)
H2AC6Histone H2A; Belongs to the histone H2A family. (145 aa)
HIST1H3EHistone H3; Belongs to the histone H3 family. (136 aa)
LOC100620620Histone H2A; Belongs to the histone H2A family. (113 aa)
H2BC21Histone H2B; Belongs to the histone H2B family. (126 aa)
RRN3RNA polymerase I-specific transcription initiation factor RRN3 isoform 1. (651 aa)
ZNRD1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (135 aa)
CD3EAPDNA-directed RNA polymerase I subunit RPA34 isoform 1. (496 aa)
UBTFUpstream binding transcription factor. (751 aa)
H2AXHistone H2A; Belongs to the histone H2A family. (143 aa)
POLR1CRNA polymerase I and III subunit C. (351 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (153 aa)
GTF2H5Uncharacterized protein. (88 aa)
H2AZ2Histone H2A; Belongs to the histone H2A family. (145 aa)
CDK7Cyclin dependent kinase 7; Belongs to the protein kinase superfamily. (361 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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