34 items (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	COL6A3	Collagen type VI alpha 3 chain. (2911 aa)
	COL10A1	Type X collagen. (675 aa)
	COL12A1	Collagen type XII alpha 1 chain. (3065 aa)
	COL15A1	Collagen type XV alpha 1 chain. (1359 aa)
	COL27A1	Collagen type XXVII alpha 1 chain. (1843 aa)
	COL5A1	Fibrillar collagen NC1 domain-containing protein. (1918 aa)
	COL22A1	Collagen type XXII alpha 1 chain. (1602 aa)
	COL7A1	Uncharacterized protein. (2938 aa)
	COL5A3	Collagen type V alpha 3 chain. (1747 aa)
	COL23A1	Collagen type XXIII alpha 1 chain. (540 aa)
	COL1A2	Fibrillar collagen NC1 domain-containing protein. (1135 aa)
	COL6A2	Collagen type VI alpha 2 chain. (943 aa)
	COL17A1	Collagen type XVII alpha 1 chain. (1506 aa)
	COL18A1	Collagen type XVIII alpha 1 chain. (1755 aa)
	COL25A1	Collagen type XXV alpha 1 chain. (695 aa)
	COL16A1	Collagen alpha-1(XVI) chain isoform X2. (1624 aa)
	COL2A1	Collagen type II alpha 1 chain. (1486 aa)
	COL9A3	Collagen type IX alpha 3 chain. (684 aa)
	COL20A1	Uncharacterized protein. (1338 aa)
	COL8A2	Collagen type VIII alpha 2 chain. (707 aa)
	COL28A1	Collagen type XXVIII alpha 1 chain. (1236 aa)
	COL6A5	Collagen type VI alpha 5 chain. (2337 aa)
	COL11A2	Collagen type XI alpha 2 chain. (1796 aa)
	COL9A1	Collagen type IX alpha 1 chain. (922 aa)
	COL19A1	Collagen type XIX alpha 1 chain. (1132 aa)
	COL14A1	Collagen alpha-1(XIV) chain isoform X1. (1796 aa)
	COL9A2	Uncharacterized protein. (709 aa)
	COL6A1	Collagen type VI alpha 1 chain. (1028 aa)
	COL1A1	Collagen type I alpha 1 chain. (1477 aa)
	COL8A1	Collagen type VIII alpha 1 chain. (759 aa)
	COL6A6	Collagen type VI alpha 6 chain. (2266 aa)
	COL11A1	Collagen type XI alpha 1 chain. (1816 aa)
	COL21A1	Collagen type XXI alpha 1 chain. (957 aa)
	COL13A1	Collagen type XIII alpha 1 chain. (726 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COL10A1	COL11A1	ENSSSCP00000004785	ENSSSCP00000072487	Type X collagen.	Collagen type XI alpha 1 chain.	0.568
COL10A1	COL11A2	ENSSSCP00000004785	ENSSSCP00000059675	Type X collagen.	Collagen type XI alpha 2 chain.	0.590
COL10A1	COL12A1	ENSSSCP00000004785	ENSSSCP00000004838	Type X collagen.	Collagen type XII alpha 1 chain.	0.471
COL10A1	COL13A1	ENSSSCP00000004785	ENSSSCP00000074365	Type X collagen.	Collagen type XIII alpha 1 chain.	0.516
COL10A1	COL14A1	ENSSSCP00000004785	ENSSSCP00000065552	Type X collagen.	Collagen alpha-1(XIV) chain isoform X1.	0.551
COL10A1	COL15A1	ENSSSCP00000004785	ENSSSCP00000005773	Type X collagen.	Collagen type XV alpha 1 chain.	0.519
COL10A1	COL16A1	ENSSSCP00000004785	ENSSSCP00000033997	Type X collagen.	Collagen alpha-1(XVI) chain isoform X2.	0.477
COL10A1	COL17A1	ENSSSCP00000004785	ENSSSCP00000027778	Type X collagen.	Collagen type XVII alpha 1 chain.	0.529
COL10A1	COL18A1	ENSSSCP00000004785	ENSSSCP00000031327	Type X collagen.	Collagen type XVIII alpha 1 chain.	0.547
COL10A1	COL19A1	ENSSSCP00000004785	ENSSSCP00000064402	Type X collagen.	Collagen type XIX alpha 1 chain.	0.466
COL10A1	COL1A1	ENSSSCP00000004785	ENSSSCP00000066291	Type X collagen.	Collagen type I alpha 1 chain.	0.588
COL10A1	COL1A2	ENSSSCP00000004785	ENSSSCP00000016253	Type X collagen.	Fibrillar collagen NC1 domain-containing protein.	0.577
COL10A1	COL20A1	ENSSSCP00000004785	ENSSSCP00000043189	Type X collagen.	Uncharacterized protein.	0.510
COL10A1	COL21A1	ENSSSCP00000004785	ENSSSCP00000072535	Type X collagen.	Collagen type XXI alpha 1 chain.	0.584
COL10A1	COL22A1	ENSSSCP00000004785	ENSSSCP00000006349	Type X collagen.	Collagen type XXII alpha 1 chain.	0.486
COL10A1	COL23A1	ENSSSCP00000004785	ENSSSCP00000014917	Type X collagen.	Collagen type XXIII alpha 1 chain.	0.504
COL10A1	COL25A1	ENSSSCP00000004785	ENSSSCP00000033136	Type X collagen.	Collagen type XXV alpha 1 chain.	0.521
COL10A1	COL27A1	ENSSSCP00000004785	ENSSSCP00000005883	Type X collagen.	Collagen type XXVII alpha 1 chain.	0.541
COL10A1	COL28A1	ENSSSCP00000004785	ENSSSCP00000055541	Type X collagen.	Collagen type XXVIII alpha 1 chain.	0.548
COL10A1	COL2A1	ENSSSCP00000004785	ENSSSCP00000036099	Type X collagen.	Collagen type II alpha 1 chain.	0.681