(137 nodes) GTP hydrolysis and joining of the 60S ribosomal subunit network (Camelus dromedarius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCDRP00005000272	annotation not available (82 aa)
	Cadr_000004725	40S ribosomal protein S12. (129 aa)
	ENSCDRP00005000866	annotation not available (96 aa)
	ENSCDRP00005001068	annotation not available (56 aa)
	Cadr_000001033	40S ribosomal protein S21. (88 aa)
	RPL7A	60S ribosomal protein L7a. (266 aa)
	RPL24	60S ribosomal protein L24. (157 aa)
	Cadr_000010755	60S acidic ribosomal protein P0-like. (290 aa)
	Cadr_000010895	40S ribosomal protein S17. (135 aa)
	ENSCDRP00005002333	annotation not available (96 aa)
	Cadr_000011034	60S ribosomal protein L35. (117 aa)
	RPS14	40S ribosomal protein S14. (235 aa)
	RPL18	60S ribosomal protein L18. (188 aa)
	ENSCDRP00005003231	annotation not available (198 aa)
	Cadr_000004021	60S ribosomal protein L7a. (140 aa)
	RPL5	60S ribosomal protein L5. (297 aa)
	LOC105091624	40S ribosomal protein S4. (263 aa)
	Cadr_000006005	60S ribosomal protein L31. (124 aa)
	RPL4	60S ribosomal protein L4. (422 aa)
	RPS9	40S ribosomal protein S9. (194 aa)
	Cadr_000006312	60S ribosomal protein L18a. (130 aa)
	Cadr_000010842	60S ribosomal protein L9. (116 aa)
	ENSCDRP00005004638	annotation not available (130 aa)
	RPS3	Small subunit ribosomal protein S3e. (289 aa)
	Cadr_000006015	40S ribosomal protein S18. (137 aa)
	ENSCDRP00005004857	annotation not available (88 aa)
	RPL15	60S ribosomal protein L15. (204 aa)
	RPL19	60S ribosomal protein L19. (196 aa)
	Cadr_000016617	40S ribosomal protein S8. (208 aa)
	RPS10-NUDT3	40S ribosomal protein S10. (171 aa)
	EEF2	Elongation factor 2. (858 aa)
	RPL26L1	Ribosomal protein L26 like 1. (140 aa)
	RPS26	40S ribosomal protein S26. (115 aa)
	Cadr_000006049	60S ribosomal protein L15. (197 aa)
	Cadr_000018898	60S ribosomal protein L4. (375 aa)
	LOC105090104	60S acidic ribosomal protein P1. (114 aa)
	RPL13A	60S ribosomal protein L13a. (203 aa)
	RPS16	40S ribosomal protein S16. (146 aa)
	RPS11	40S ribosomal protein S11. (158 aa)
	ENSCDRP00005010692	annotation not available (113 aa)
	Cadr_000001612	60S ribosomal protein L17. (164 aa)
	RPL7L1	60S ribosomal protein L7-like 1. (256 aa)
	ENSCDRP00005011063	annotation not available (96 aa)
	RPL28	60S ribosomal protein L28. (137 aa)
	RPL9	60S ribosomal protein L9. (221 aa)
	Cadr_000010434	60S ribosomal protein L31. (124 aa)
	Cadr_000009652	60S ribosomal protein L28. (132 aa)
	ENSCDRP00005012374	annotation not available (90 aa)
	ENSCDRP00005012559	annotation not available (52 aa)
	ENSCDRP00005012715	annotation not available (69 aa)
	ENSCDRP00005012998	annotation not available (105 aa)
	RACK1	Receptor of activated protein C kinase 1. (374 aa)
	RPLP2	60S acidic ribosomal protein P2. (115 aa)
	RPL30	60S ribosomal protein L30. (115 aa)
	ENSCDRP00005013497	annotation not available (96 aa)
	RPS4X	40S ribosomal protein S4. (263 aa)
	ENSCDRP00005013843	Large subunit ribosomal protein L37Ae. (78 aa)
	RPS5	40S ribosomal protein S5. (204 aa)
	Cadr_000023254	60S ribosomal protein L23a. (156 aa)
	FAU	Ubiquitin-like protein FUBI. (133 aa)
	RPL7	60S ribosomal protein L7. (254 aa)
	RPL27	60S ribosomal protein L27. (136 aa)
	RPL27A	60S ribosomal protein L27a. (148 aa)
	RPS28	Small subunit ribosomal protein S28e. (69 aa)
	RPL17	60S ribosomal protein L17. (184 aa)
	RPS15	40S ribosomal protein S15. (459 aa)
	Cadr_000000604	60S ribosomal protein L24. (157 aa)
	RPL34	60S ribosomal protein L34. (139 aa)
	CCDC105	Coiled-coil domain-containing protein 105. (496 aa)
	ENSCDRP00005017297	annotation not available (51 aa)
	RPL10	60S ribosomal protein L10. (214 aa)
	Cadr_000012830	60S ribosomal protein L23a. (170 aa)
	ENSCDRP00005017803	annotation not available (109 aa)
	RPS2	40S ribosomal protein S2. (296 aa)
	RPL18A	60S ribosomal protein L18a. (176 aa)
	ENSCDRP00005018985	annotation not available (169 aa)
	RPL39	60S ribosomal protein L39. (51 aa)
	RPL36A-HNRNPH2	60S ribosomal protein L36a. (154 aa)
	ENSCDRP00005019321	annotation not available (77 aa)
	RPL38	60S ribosomal protein L38. (70 aa)
	RPS8	40S ribosomal protein S8. (208 aa)
	RPL23A	60S ribosomal protein L23a. (155 aa)
	RPL3	60S ribosomal protein L3. (403 aa)
	Cadr_000004400	40S ribosomal protein SA. (175 aa)
	ENSCDRP00005020472	annotation not available (91 aa)
	RPS17	40S ribosomal protein S17. (191 aa)
	RPL12	60S ribosomal protein L12. (165 aa)
	LOC105086033	Uncharacterized protein CXorf66 homolog. (362 aa)
	RPLP1	60S acidic ribosomal protein P1. (115 aa)
	RPL26	60S ribosomal protein L26. (145 aa)
	RPS13	40S ribosomal protein S13. (165 aa)
	RPS15A	40S ribosomal protein S15a. (130 aa)
	LOC105102486	40S ribosomal protein S4. (263 aa)
	RPL22	60S ribosomal protein L22. (128 aa)
	RPL37A	Putative 60S ribosomal protein L37a. (92 aa)
	Cadr_000018017	60S ribosomal protein L32. (135 aa)
	ENSCDRP00005023886	annotation not available (124 aa)
	RPL37	60S ribosomal protein L37. (97 aa)
	ENSCDRP00005024222	annotation not available (118 aa)
	Cadr_000021780	60S ribosomal protein L4. (383 aa)
	RPS23	40S ribosomal protein S23. (151 aa)
	RPL35	60S ribosomal protein L35. (259 aa)
	ENSCDRP00005024622	annotation not available (63 aa)
	RPL31	60S ribosomal protein L31. (125 aa)
	ENSCDRP00005025591	annotation not available (142 aa)
	ENSCDRP00005025681	annotation not available (77 aa)
	RPLP0	60S acidic ribosomal protein P0. (319 aa)
	RPL32	60S ribosomal protein L32. (150 aa)
	RPL11	60S ribosomal protein L11. (272 aa)
	LOC105092442	Small subunit ribosomal protein S26e. (115 aa)
	LOC105092229	Small subunit ribosomal protein S26e. (115 aa)
	RPL8	60S ribosomal protein L8. (257 aa)
	RPS19	40S ribosomal protein S19. (306 aa)
	RPS3A	40S ribosomal protein S3a. (264 aa)
	LOC105092122	60S ribosomal protein L3. (401 aa)
	ENSCDRP00005028549	annotation not available (66 aa)
	RPL6	60S ribosomal protein L6. (287 aa)
	RPL23	60S ribosomal protein L23. (140 aa)
	ENSCDRP00005029265	annotation not available (210 aa)
	RPL14	60S ribosomal protein L14. (211 aa)
	RPL10L	60S ribosomal protein L10-like. (214 aa)
	Cadr_000014780	60S ribosomal protein L10. (159 aa)
	RPS29	40S ribosomal protein S29. (56 aa)
	RPL36AL	60S ribosomal protein L36a. (106 aa)
	RPS20	40S ribosomal protein S20. (119 aa)
	RPS25	40S ribosomal protein S25. (125 aa)
	ENSCDRP00005030271	annotation not available (220 aa)
	RPL35A	60S ribosomal protein L35a. (110 aa)
	Cadr_000022560	40S ribosomal protein S2. (231 aa)
	Cadr_000027332	60S ribosomal protein L13. (210 aa)
	ENSCDRP00005031062	annotation not available (69 aa)
	Cadr_000012595	60S ribosomal protein L23a. (120 aa)
	RPS12	40S ribosomal protein S12. (132 aa)
	RPS18	40S ribosomal protein S18. (152 aa)
	ENSCDRP00005031899	annotation not available (114 aa)
	RPL21	60S ribosomal protein L21. (160 aa)
	RPS24	40S ribosomal protein S24. (132 aa)

Your Current Organism:

Camelus dromedarius

NCBI taxonomy Id: 9838
Other names: Arabian camel, C. dromedarius, camel, dromedaries, dromedary, dromedary camel, one-humped camel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCDC105	Cadr_000000604	ENSCDRP00005017257	ENSCDRP00005016800	Coiled-coil domain-containing protein 105.	60S ribosomal protein L24.	0.854
CCDC105	Cadr_000001033	ENSCDRP00005017257	ENSCDRP00005001178	Coiled-coil domain-containing protein 105.	40S ribosomal protein S21.	0.880
CCDC105	Cadr_000001612	ENSCDRP00005017257	ENSCDRP00005010722	Coiled-coil domain-containing protein 105.	60S ribosomal protein L17.	0.821
CCDC105	Cadr_000004021	ENSCDRP00005017257	ENSCDRP00005003389	Coiled-coil domain-containing protein 105.	60S ribosomal protein L7a.	0.854
CCDC105	Cadr_000004400	ENSCDRP00005017257	ENSCDRP00005020097	Coiled-coil domain-containing protein 105.	40S ribosomal protein SA.	0.926
CCDC105	Cadr_000004725	ENSCDRP00005017257	ENSCDRP00005000379	Coiled-coil domain-containing protein 105.	40S ribosomal protein S12.	0.873
CCDC105	Cadr_000006005	ENSCDRP00005017257	ENSCDRP00005003580	Coiled-coil domain-containing protein 105.	60S ribosomal protein L31.	0.783
CCDC105	Cadr_000006015	ENSCDRP00005017257	ENSCDRP00005004701	Coiled-coil domain-containing protein 105.	40S ribosomal protein S18.	0.890
CCDC105	Cadr_000006049	ENSCDRP00005017257	ENSCDRP00005007294	Coiled-coil domain-containing protein 105.	60S ribosomal protein L15.	0.855
CCDC105	Cadr_000006312	ENSCDRP00005017257	ENSCDRP00005004338	Coiled-coil domain-containing protein 105.	60S ribosomal protein L18a.	0.805
CCDC105	Cadr_000009652	ENSCDRP00005017257	ENSCDRP00005012172	Coiled-coil domain-containing protein 105.	60S ribosomal protein L28.	0.866
CCDC105	Cadr_000010434	ENSCDRP00005017257	ENSCDRP00005011877	Coiled-coil domain-containing protein 105.	60S ribosomal protein L31.	0.783
CCDC105	Cadr_000010755	ENSCDRP00005017257	ENSCDRP00005001818	Coiled-coil domain-containing protein 105.	60S acidic ribosomal protein P0-like.	0.879
CCDC105	Cadr_000010842	ENSCDRP00005017257	ENSCDRP00005004542	Coiled-coil domain-containing protein 105.	60S ribosomal protein L9.	0.815
CCDC105	Cadr_000010895	ENSCDRP00005017257	ENSCDRP00005001839	Coiled-coil domain-containing protein 105.	40S ribosomal protein S17.	0.916
CCDC105	Cadr_000011034	ENSCDRP00005017257	ENSCDRP00005002353	Coiled-coil domain-containing protein 105.	60S ribosomal protein L35.	0.885
CCDC105	Cadr_000012595	ENSCDRP00005017257	ENSCDRP00005031599	Coiled-coil domain-containing protein 105.	60S ribosomal protein L23a.	0.736
CCDC105	Cadr_000012830	ENSCDRP00005017257	ENSCDRP00005017682	Coiled-coil domain-containing protein 105.	60S ribosomal protein L23a.	0.736
CCDC105	Cadr_000014780	ENSCDRP00005017257	ENSCDRP00005029355	Coiled-coil domain-containing protein 105.	60S ribosomal protein L10.	0.809
CCDC105	Cadr_000016617	ENSCDRP00005017257	ENSCDRP00005005596	Coiled-coil domain-containing protein 105.	40S ribosomal protein S8.	0.921