(38 nodes) Calcium-ion regulated exocytosis network (Camelus dromedarius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	STX1A	Syntaxin-1A. (335 aa)
	SYT9	Synaptotagmin-9. (501 aa)
	SYT3	Synaptotagmin-3. (592 aa)
	STXBP1	Syntaxin-binding protein 1. (603 aa)
	UNC13A	Protein unc-13-like protein A. (1723 aa)
	PPP3CB	Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform. (488 aa)
	RIMS3	Regulating synaptic membrane exocytosis protein 3. (308 aa)
	SYT1	Synaptotagmin-1. (422 aa)
	UNC13C	Protein unc-13-like protein C. (2217 aa)
	ZP4	Zona pellucida sperm-binding protein 4. (533 aa)
	SYT10	Synaptotagmin-10. (524 aa)
	SYT17	Synaptotagmin-17. (474 aa)
	VAMP7	Vesicle-associated membrane protein 7. (220 aa)
	SYT2	Synaptotagmin-2. (423 aa)
	CADPS	Calcium-dependent secretion activator 1. (1298 aa)
	MYH9	Myosin-9. (1960 aa)
	SYT8	Synaptotagmin-8. (388 aa)
	RIMS2	Regulating synaptic membrane exocytosis protein 2. (1587 aa)
	NOTCH1	Neurogenic locus notch-like protein 1. (2556 aa)
	RAPGEF4	Rap guanine nucleotide exchange factor 4. (1011 aa)
	RIMS1	Regulating synaptic membrane exocytosis protein 1. (1012 aa)
	Equatorin	Equatorin. (411 aa)
	SYT4	Synaptotagmin-4. (425 aa)
	CADPS2	Calcium-dependent secretion activator 2 isoform X1. (1157 aa)
	SYT6	Synaptotagmin-6. (521 aa)
	SYT5	Synaptotagmin-5. (386 aa)
	Cadr_000015837	Protein unc-13-like protein B. (4266 aa)
	SYT7	Synaptotagmin-7. (611 aa)
	SYT11	Synaptotagmin-11. (431 aa)
	VAMP3	Vesicle-associated membrane protein 3. (104 aa)
	Cadr_000008998	Synaptotagmin-15. (416 aa)
	SYT12	Synaptotagmin-12. (421 aa)
	DOC2B	Double C2-like domain-containing protein beta. (374 aa)
	STX1B	Syntaxin-1B. (341 aa)
	SYT13	Synaptotagmin-13. (426 aa)
	RAB3A	Ras-related protein Rab-3A. (302 aa)
	ENSCDRP00005016077	annotation not available (180 aa)
	NLRP5	NACHT protein. (1160 aa)

Your Current Organism:

Camelus dromedarius

NCBI taxonomy Id: 9838
Other names: Arabian camel, C. dromedarius, camel, dromedaries, dromedary, dromedary camel, one-humped camel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cadr_000008998	RIMS2	ENSCDRP00005019110	ENSCDRP00005030652	Synaptotagmin-15.	Regulating synaptic membrane exocytosis protein 2.	0.495
Cadr_000008998	UNC13A	ENSCDRP00005019110	ENSCDRP00005020283	Synaptotagmin-15.	Protein unc-13-like protein A.	0.525
Cadr_000015837	ENSCDRP00005016077	ENSCDRP00005010689	ENSCDRP00005016077	Protein unc-13-like protein B.	annotation not available	0.626
Cadr_000015837	RAB3A	ENSCDRP00005010689	ENSCDRP00005016817	Protein unc-13-like protein B.	Ras-related protein Rab-3A.	0.503
Cadr_000015837	RIMS1	ENSCDRP00005010689	ENSCDRP00005001936	Protein unc-13-like protein B.	Regulating synaptic membrane exocytosis protein 1.	0.877
Cadr_000015837	RIMS2	ENSCDRP00005010689	ENSCDRP00005030652	Protein unc-13-like protein B.	Regulating synaptic membrane exocytosis protein 2.	0.995
Cadr_000015837	RIMS3	ENSCDRP00005010689	ENSCDRP00005020807	Protein unc-13-like protein B.	Regulating synaptic membrane exocytosis protein 3.	0.626
Cadr_000015837	STX1A	ENSCDRP00005010689	ENSCDRP00005005052	Protein unc-13-like protein B.	Syntaxin-1A.	0.601
Cadr_000015837	STX1B	ENSCDRP00005010689	ENSCDRP00005018184	Protein unc-13-like protein B.	Syntaxin-1B.	0.477
Cadr_000015837	STXBP1	ENSCDRP00005010689	ENSCDRP00005020182	Protein unc-13-like protein B.	Syntaxin-binding protein 1.	0.556
Cadr_000015837	SYT1	ENSCDRP00005010689	ENSCDRP00005021095	Protein unc-13-like protein B.	Synaptotagmin-1.	0.552
Cadr_000015837	SYT11	ENSCDRP00005010689	ENSCDRP00005013670	Protein unc-13-like protein B.	Synaptotagmin-11.	0.618
Cadr_000015837	SYT17	ENSCDRP00005010689	ENSCDRP00005024282	Protein unc-13-like protein B.	Synaptotagmin-17.	0.450
Cadr_000015837	SYT2	ENSCDRP00005010689	ENSCDRP00005028829	Protein unc-13-like protein B.	Synaptotagmin-2.	0.552
Cadr_000015837	UNC13A	ENSCDRP00005010689	ENSCDRP00005020283	Protein unc-13-like protein B.	Protein unc-13-like protein A.	0.900
Cadr_000015837	UNC13C	ENSCDRP00005010689	ENSCDRP00005023312	Protein unc-13-like protein B.	Protein unc-13-like protein C.	0.900
Cadr_000015837	VAMP3	ENSCDRP00005010689	ENSCDRP00005014406	Protein unc-13-like protein B.	Vesicle-associated membrane protein 3.	0.414
DOC2B	RAB3A	ENSCDRP00005018456	ENSCDRP00005016817	Double C2-like domain-containing protein beta.	Ras-related protein Rab-3A.	0.471
DOC2B	STX1A	ENSCDRP00005018456	ENSCDRP00005005052	Double C2-like domain-containing protein beta.	Syntaxin-1A.	0.456
ENSCDRP00005016077	Cadr_000015837	ENSCDRP00005016077	ENSCDRP00005010689	annotation not available	Protein unc-13-like protein B.	0.626