48 items (Camelus dromedarius) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UTP18	U3 small nucleolar RNA-associated protein 18-like protein. (554 aa)
	RSL24D1	Putative ribosome biogenesis protein RLP24. (168 aa)
	IMP3	U3 small nucleolar ribonucleoprotein IMP3. (184 aa)
	Cadr_000008932	Ribosome biogenesis protein NSA2-like protein. (234 aa)
	NOB1	RNA-binding protein NOB1. (414 aa)
	WDR12	Ribosome biogenesis protein WDR12. (423 aa)
	UTP3	Something about silencing protein 10. (474 aa)
	EMG1	Ribosomal RNA small subunit methyltransferase NEP1. (244 aa)
	RIOK3	Serine/threonine-protein kinase RIO3. (519 aa)
	NOL6	Nucleolar protein 6. (1146 aa)
	NOL10	Nucleolar protein 10. (688 aa)
	WDR46	WD repeat-containing protein 46. (609 aa)
	UTP23	rRNA-processing protein UTP23-like protein. (248 aa)
	FAM207A	Protein FAM207A. (218 aa)
	RRP15	RRP15-like protein. (284 aa)
	UTP6	U3 small nucleolar RNA-associated protein 6-like protein. (598 aa)
	ENSCDRP00005011207	KRR1 small subunit processome component homolog isoform X1. (324 aa)
	UTP14A	U3 small nucleolar RNA-associated protein 14-like protein A. (774 aa)
	RIOK2	Serine/threonine-protein kinase RIO2. (579 aa)
	TSR1	Pre-rRNA-processing protein TSR1-like protein. (804 aa)
	LTV1	Protein LTV1-like protein. (475 aa)
	PIN4	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4. (128 aa)
	ENSCDRP00005014744	annotation not available (324 aa)
	RIOK1	Serine/threonine-protein kinase RIO1. (568 aa)
	RRP1	Ribosomal RNA processing protein 1-like protein A. (424 aa)
	ENSCDRP00005019447	annotation not available (90 aa)
	PWP2	Periodic tryptophan protein 2-like protein. (917 aa)
	PES1	Pescadillo-like protein. (589 aa)
	NOC4L	Nucleolar complex protein 4-like protein. (514 aa)
	EIF6	Eukaryotic translation initiation factor 6. (292 aa)
	KRR1	KRR1 small subunit processome component-like protein. (384 aa)
	MAK16	Protein MAK16-like protein. (298 aa)
	NOP9	Nucleolar protein 9. (636 aa)
	NOP14	Nucleolar protein 14. (855 aa)
	NOC2L	Nucleolar complex protein 2-like protein. (748 aa)
	RRP7A	Ribosomal RNA-processing protein 7-like protein A. (280 aa)
	MPHOSPH10	U3 small nucleolar ribonucleoprotein MPP10. (673 aa)
	BMS1	Ribosome biogenesis protein BMS1-like protein. (1288 aa)
	WDR36	WD repeat-containing protein 36. (951 aa)
	MRTO4	mRNA turnover protein 4-like protein. (239 aa)
	WDR3	WD repeat-containing protein 3. (943 aa)
	IMP4	U3 small nucleolar ribonucleoprotein IMP4. (291 aa)
	NSA2	Ribosome biogenesis protein NSA2-like protein. (276 aa)
	CMSS1	Uncharacterized protein. (367 aa)
	HUNK	Hormonally up-regulated neu tumor-associated kinase. (714 aa)
	FCF1	rRNA-processing protein FCF1-like protein. (198 aa)
	Cadr_000015337	Ribosome biogenesis protein NSA2-like protein. (260 aa)
	UTP20	Small subunit processome component 20-like protein. (2778 aa)

Your Current Organism:

Camelus dromedarius

NCBI taxonomy Id: 9838
Other names: Arabian camel, C. dromedarius, camel, dromedaries, dromedary, dromedary camel, one-humped camel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS1	CMSS1	ENSCDRP00005010145	ENSCDRP00005003304	Ribosome biogenesis protein BMS1-like protein.	Uncharacterized protein.	0.460
BMS1	EMG1	ENSCDRP00005010145	ENSCDRP00005028533	Ribosome biogenesis protein BMS1-like protein.	Ribosomal RNA small subunit methyltransferase NEP1.	0.973
BMS1	ENSCDRP00005011207	ENSCDRP00005010145	ENSCDRP00005011207	Ribosome biogenesis protein BMS1-like protein.	KRR1 small subunit processome component homolog isoform X1.	0.923
BMS1	ENSCDRP00005014744	ENSCDRP00005010145	ENSCDRP00005014744	Ribosome biogenesis protein BMS1-like protein.	annotation not available	0.923
BMS1	ENSCDRP00005019447	ENSCDRP00005010145	ENSCDRP00005019447	Ribosome biogenesis protein BMS1-like protein.	annotation not available	0.586
BMS1	FCF1	ENSCDRP00005010145	ENSCDRP00005000829	Ribosome biogenesis protein BMS1-like protein.	rRNA-processing protein FCF1-like protein.	0.985
BMS1	IMP3	ENSCDRP00005010145	ENSCDRP00005005461	Ribosome biogenesis protein BMS1-like protein.	U3 small nucleolar ribonucleoprotein IMP3.	0.981
BMS1	IMP4	ENSCDRP00005010145	ENSCDRP00005003839	Ribosome biogenesis protein BMS1-like protein.	U3 small nucleolar ribonucleoprotein IMP4.	0.986
BMS1	KRR1	ENSCDRP00005010145	ENSCDRP00005024638	Ribosome biogenesis protein BMS1-like protein.	KRR1 small subunit processome component-like protein.	0.923
BMS1	LTV1	ENSCDRP00005010145	ENSCDRP00005013418	Ribosome biogenesis protein BMS1-like protein.	Protein LTV1-like protein.	0.865
BMS1	MAK16	ENSCDRP00005010145	ENSCDRP00005025284	Ribosome biogenesis protein BMS1-like protein.	Protein MAK16-like protein.	0.848
BMS1	MPHOSPH10	ENSCDRP00005010145	ENSCDRP00005006816	Ribosome biogenesis protein BMS1-like protein.	U3 small nucleolar ribonucleoprotein MPP10.	0.994
BMS1	MRTO4	ENSCDRP00005010145	ENSCDRP00005010660	Ribosome biogenesis protein BMS1-like protein.	mRNA turnover protein 4-like protein.	0.830
BMS1	NOB1	ENSCDRP00005010145	ENSCDRP00005027932	Ribosome biogenesis protein BMS1-like protein.	RNA-binding protein NOB1.	0.885
BMS1	NOC2L	ENSCDRP00005010145	ENSCDRP00005006364	Ribosome biogenesis protein BMS1-like protein.	Nucleolar complex protein 2-like protein.	0.860
BMS1	NOC4L	ENSCDRP00005010145	ENSCDRP00005020940	Ribosome biogenesis protein BMS1-like protein.	Nucleolar complex protein 4-like protein.	0.981
BMS1	NOL10	ENSCDRP00005010145	ENSCDRP00005031430	Ribosome biogenesis protein BMS1-like protein.	Nucleolar protein 10.	0.995
BMS1	NOL6	ENSCDRP00005010145	ENSCDRP00005029982	Ribosome biogenesis protein BMS1-like protein.	Nucleolar protein 6.	0.995
BMS1	NOP14	ENSCDRP00005010145	ENSCDRP00005005496	Ribosome biogenesis protein BMS1-like protein.	Nucleolar protein 14.	0.996
BMS1	NOP9	ENSCDRP00005010145	ENSCDRP00005025711	Ribosome biogenesis protein BMS1-like protein.	Nucleolar protein 9.	0.669