(7 nodes) HOPS complex network (Camelus dromedarius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VPS16	Vacuolar protein sorting-associated protein 16-like protein. (839 aa)
	VPS18	Vacuolar protein sorting-associated protein 18-like protein. (973 aa)
	VPS39	Vam6/Vps39-like protein. (875 aa)
	VPS11	Vacuolar protein sorting-associated protein 11-like protein. (941 aa)
	WDR88	WD repeat-containing protein 88. (176 aa)
	VPS41	Vacuolar protein sorting-associated protein 41-like protein. (854 aa)
	CAPRIN2	Caprin-2. (1069 aa)

Your Current Organism:

Camelus dromedarius

NCBI taxonomy Id: 9838
Other names: Arabian camel, C. dromedarius, camel, dromedaries, dromedary, dromedary camel, one-humped camel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VPS11	VPS16	ENSCDRP00005030124	ENSCDRP00005013867	Vacuolar protein sorting-associated protein 11-like protein.	Vacuolar protein sorting-associated protein 16-like protein.	0.999
VPS11	VPS18	ENSCDRP00005030124	ENSCDRP00005000100	Vacuolar protein sorting-associated protein 11-like protein.	Vacuolar protein sorting-associated protein 18-like protein.	0.999
VPS11	VPS39	ENSCDRP00005030124	ENSCDRP00005026776	Vacuolar protein sorting-associated protein 11-like protein.	Vam6/Vps39-like protein.	0.999
VPS11	VPS41	ENSCDRP00005030124	ENSCDRP00005018204	Vacuolar protein sorting-associated protein 11-like protein.	Vacuolar protein sorting-associated protein 41-like protein.	0.999
VPS16	VPS11	ENSCDRP00005013867	ENSCDRP00005030124	Vacuolar protein sorting-associated protein 16-like protein.	Vacuolar protein sorting-associated protein 11-like protein.	0.999
VPS16	VPS18	ENSCDRP00005013867	ENSCDRP00005000100	Vacuolar protein sorting-associated protein 16-like protein.	Vacuolar protein sorting-associated protein 18-like protein.	0.999
VPS16	VPS39	ENSCDRP00005013867	ENSCDRP00005026776	Vacuolar protein sorting-associated protein 16-like protein.	Vam6/Vps39-like protein.	0.999
VPS16	VPS41	ENSCDRP00005013867	ENSCDRP00005018204	Vacuolar protein sorting-associated protein 16-like protein.	Vacuolar protein sorting-associated protein 41-like protein.	0.999
VPS18	VPS11	ENSCDRP00005000100	ENSCDRP00005030124	Vacuolar protein sorting-associated protein 18-like protein.	Vacuolar protein sorting-associated protein 11-like protein.	0.999
VPS18	VPS16	ENSCDRP00005000100	ENSCDRP00005013867	Vacuolar protein sorting-associated protein 18-like protein.	Vacuolar protein sorting-associated protein 16-like protein.	0.999
VPS18	VPS39	ENSCDRP00005000100	ENSCDRP00005026776	Vacuolar protein sorting-associated protein 18-like protein.	Vam6/Vps39-like protein.	0.999
VPS18	VPS41	ENSCDRP00005000100	ENSCDRP00005018204	Vacuolar protein sorting-associated protein 18-like protein.	Vacuolar protein sorting-associated protein 41-like protein.	0.998
VPS39	VPS11	ENSCDRP00005026776	ENSCDRP00005030124	Vam6/Vps39-like protein.	Vacuolar protein sorting-associated protein 11-like protein.	0.999
VPS39	VPS16	ENSCDRP00005026776	ENSCDRP00005013867	Vam6/Vps39-like protein.	Vacuolar protein sorting-associated protein 16-like protein.	0.999
VPS39	VPS18	ENSCDRP00005026776	ENSCDRP00005000100	Vam6/Vps39-like protein.	Vacuolar protein sorting-associated protein 18-like protein.	0.999
VPS39	VPS41	ENSCDRP00005026776	ENSCDRP00005018204	Vam6/Vps39-like protein.	Vacuolar protein sorting-associated protein 41-like protein.	0.999
VPS41	VPS11	ENSCDRP00005018204	ENSCDRP00005030124	Vacuolar protein sorting-associated protein 41-like protein.	Vacuolar protein sorting-associated protein 11-like protein.	0.999
VPS41	VPS16	ENSCDRP00005018204	ENSCDRP00005013867	Vacuolar protein sorting-associated protein 41-like protein.	Vacuolar protein sorting-associated protein 16-like protein.	0.999
VPS41	VPS18	ENSCDRP00005018204	ENSCDRP00005000100	Vacuolar protein sorting-associated protein 41-like protein.	Vacuolar protein sorting-associated protein 18-like protein.	0.998
VPS41	VPS39	ENSCDRP00005018204	ENSCDRP00005026776	Vacuolar protein sorting-associated protein 41-like protein.	Vam6/Vps39-like protein.	0.999