46 items (Camelus dromedarius) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ITGAV	Integrin alpha-V. (1048 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (169 aa)
	MTMR4	Myotubularin-related protein 4. (1210 aa)
	ITGB3	Integrin beta-3. (784 aa)
	ITGB5	Integrin beta-5. (794 aa)
	CBL	E3 ubiquitin-protein ligase CBL. (908 aa)
	LDLRAD4	Low-density lipoprotein receptor class A domain-containing protein 4. (287 aa)
	SMURF2	E3 ubiquitin-protein ligase SMURF2. (705 aa)
	ITGA8	Integrin alpha 8. (1062 aa)
	BAMBI	BMP and activin membrane-bound inhibitor-like protein. (260 aa)
	FBN1	Fibrillin-1. (2871 aa)
	ITGB1	Integrin beta-1. (793 aa)
	PMEPA1	Protein TMEPAI. (268 aa)
	NEDD8	Ubiquitin-like protein Nedd8. (81 aa)
	TGFB2	Transforming growth factor beta-2 proprotein. (442 aa)
	ENSCDRP00005023654	annotation not available (126 aa)
	TGFB1	Transforming growth factor beta-1 proprotein. (390 aa)
	LTBP1	Latent-transforming growth factor beta-binding protein 1 isoform X4. (1560 aa)
	Cadr_000020982	KxDL motif-containing protein 1. (176 aa)
	TGFBR1	TGF-beta receptor type-1. (503 aa)
	STRAP	Serine-threonine kinase receptor-associated protein. (350 aa)
	UBB	Polyubiquitin-B. (223 aa)
	Cadr_000023101	Peptidyl-prolyl cis-trans isomerase FKBP1A. (72 aa)
	FKBP1A	Peptidyl-prolyl cis-trans isomerase FKBP1A. (226 aa)
	SMAD2	Mothers against decapentaplegic-like protein 2. (467 aa)
	LTBP4	Latent-transforming growth factor beta-binding protein 4. (1603 aa)
	STUB1	E3 ubiquitin-protein ligase CHIP. (303 aa)
	FURIN	Furin. (793 aa)
	SMAD7	Mothers against decapentaplegic-like protein 7. (233 aa)
	ENSCDRP00005017204	annotation not available (287 aa)
	PCSK4	Proprotein convertase subtilisin/kexin type 4. (733 aa)
	UBE2M	NEDD8-conjugating enzyme Ubc12. (168 aa)
	TGFBR2	TGF-beta receptor type-2. (532 aa)
	KXD1	KxDL motif containing 1. (201 aa)
	UBA52	Ubiquitin; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11- [...] (128 aa)
	SMAD4	Mothers against decapentaplegic-like protein 4. (552 aa)
	ENSCDRP00005012205	annotation not available (111 aa)
	ENSCDRP00005010777	annotation not available (123 aa)
	ENSCDRP00005009567	Ubiquitin-large subunit ribosomal protein L40e. (89 aa)
	ZFYVE9	Zinc finger FYVE domain-containing protein 9. (1424 aa)
	ITGB8	Integrin beta-8. (766 aa)
	SMAD3	Mothers against decapentaplegic-like protein 3. (445 aa)
	PPP1R15A	Protein phosphatase 1 regulatory subunit 15A. (617 aa)
	ITGB6	Integrin beta-6. (788 aa)
	TGFB3	Transforming growth factor beta-3 proprotein. (456 aa)
	LTBP2	Latent transforming growth factor beta binding protein 2. (1819 aa)

Your Current Organism:

Camelus dromedarius

NCBI taxonomy Id: 9838
Other names: Arabian camel, C. dromedarius, camel, dromedaries, dromedary, dromedary camel, one-humped camel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAMBI	ENSCDRP00005017204	ENSCDRP00005029667	ENSCDRP00005017204	BMP and activin membrane-bound inhibitor-like protein.	annotation not available	0.671
BAMBI	SMAD2	ENSCDRP00005029667	ENSCDRP00005017860	BMP and activin membrane-bound inhibitor-like protein.	Mothers against decapentaplegic-like protein 2.	0.602
BAMBI	SMAD3	ENSCDRP00005029667	ENSCDRP00005004027	BMP and activin membrane-bound inhibitor-like protein.	Mothers against decapentaplegic-like protein 3.	0.602
BAMBI	SMAD4	ENSCDRP00005029667	ENSCDRP00005012694	BMP and activin membrane-bound inhibitor-like protein.	Mothers against decapentaplegic-like protein 4.	0.620
BAMBI	SMAD7	ENSCDRP00005029667	ENSCDRP00005017268	BMP and activin membrane-bound inhibitor-like protein.	Mothers against decapentaplegic-like protein 7.	0.956
BAMBI	TGFB1	ENSCDRP00005029667	ENSCDRP00005023368	BMP and activin membrane-bound inhibitor-like protein.	Transforming growth factor beta-1 proprotein.	0.693
BAMBI	TGFB2	ENSCDRP00005029667	ENSCDRP00005024402	BMP and activin membrane-bound inhibitor-like protein.	Transforming growth factor beta-2 proprotein.	0.423
BAMBI	TGFBR1	ENSCDRP00005029667	ENSCDRP00005022256	BMP and activin membrane-bound inhibitor-like protein.	TGF-beta receptor type-1.	0.649
BAMBI	TGFBR2	ENSCDRP00005029667	ENSCDRP00005014865	BMP and activin membrane-bound inhibitor-like protein.	TGF-beta receptor type-2.	0.678
CBL	ENSCDRP00005009567	ENSCDRP00005030518	ENSCDRP00005009567	E3 ubiquitin-protein ligase CBL.	Ubiquitin-large subunit ribosomal protein L40e.	0.571
CBL	ENSCDRP00005010777	ENSCDRP00005030518	ENSCDRP00005010777	E3 ubiquitin-protein ligase CBL.	annotation not available	0.557
CBL	ENSCDRP00005023654	ENSCDRP00005030518	ENSCDRP00005023654	E3 ubiquitin-protein ligase CBL.	annotation not available	0.728
CBL	NEDD8	ENSCDRP00005030518	ENSCDRP00005024766	E3 ubiquitin-protein ligase CBL.	Ubiquitin-like protein Nedd8.	0.561
CBL	RPS27A	ENSCDRP00005030518	ENSCDRP00005032989	E3 ubiquitin-protein ligase CBL.	Ubiquitin-40S ribosomal protein S27a.	0.822
CBL	TGFBR2	ENSCDRP00005030518	ENSCDRP00005014865	E3 ubiquitin-protein ligase CBL.	TGF-beta receptor type-2.	0.934
CBL	UBA52	ENSCDRP00005030518	ENSCDRP00005014537	E3 ubiquitin-protein ligase CBL.	Ubiquitin; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11- [...]	0.736
CBL	UBB	ENSCDRP00005030518	ENSCDRP00005020992	E3 ubiquitin-protein ligase CBL.	Polyubiquitin-B.	0.884
CBL	UBE2M	ENSCDRP00005030518	ENSCDRP00005015263	E3 ubiquitin-protein ligase CBL.	NEDD8-conjugating enzyme Ubc12.	0.589
Cadr_000020982	ENSCDRP00005023654	ENSCDRP00005022537	ENSCDRP00005023654	KxDL motif-containing protein 1.	annotation not available	0.893
Cadr_000020982	RPS27A	ENSCDRP00005022537	ENSCDRP00005032989	KxDL motif-containing protein 1.	Ubiquitin-40S ribosomal protein S27a.	0.602