STRINGSTRING
RGE_00660 RGE_00660 garR garR gdhA gdhA RGE_01420 RGE_01420 ackA ackA ilvE ilvE RGE_02820 RGE_02820 RGE_03800 RGE_03800 RGE_03880 RGE_03880 ackA-2 ackA-2 maeB maeB pflB pflB pflA pflA RGE_06500 RGE_06500 gltB gltB gltD gltD leuA leuA ackA-3 ackA-3 pta pta ldh ldh RGE_11660 RGE_11660 acnB acnB mdh mdh sdhC sdhC sdhD sdhD sdhA sdhA sdhB sdhB gltA gltA sucD sucD sucC sucC accA accA RGE_12410 RGE_12410 leuC leuC leuD leuD leuB leuB pflB-2 pflB-2 pflA-2 pflA-2 ackA-4 ackA-4 ilvD ilvD aceE aceE RGE_18620 RGE_18620 acsA-2 acsA-2 RGE_20970 RGE_20970 ppdK ppdK pyc pyc frdD frdD frdC frdC frdB frdB frdA frdA RGE_22610 RGE_22610 RGE_23040 RGE_23040 aceE-2 aceE-2 aceF aceF lpdA lpdA xsc xsc RGE_25310 RGE_25310 ldh-2 ldh-2 RGE_26220 RGE_26220 ppsA ppsA RGE_27230 RGE_27230 odhL odhL odhB odhB odhA odhA leuA-2 leuA-2 ilvC ilvC ilvH ilvH ilvI ilvI fumC fumC porC porC porA porA porB porB porD porD RGE_29810 RGE_29810 RGE_30830 RGE_30830 icd icd RGE_32390 RGE_32390 RGE_32600 RGE_32600 prpE prpE RGE_32660 RGE_32660 RGE_35280 RGE_35280 dld dld lldD lldD RGE_35630 RGE_35630 lldA lldA RGE_37010 RGE_37010 acnA acnA adhB adhB yeaU yeaU nifV nifV maeB-2 maeB-2 sucD-2 sucD-2 sucC-2 sucC-2
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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gene neighborhood
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gene co-occurrence
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RGE_00660Putative oxidoreductase. (469 aa)
garR2-hydroxy-3-oxopropionate reductase GarR. (296 aa)
gdhAGlutamate dehydrogenase GdhA; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (424 aa)
RGE_01420Phosphate acetyl/butyryl transferase family protein. (483 aa)
ackAAcetate kinase AckA; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (438 aa)
ilvEBranched-chain amino acid aminotransferase IlvE; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (307 aa)
RGE_02820Pyruvate ferredoxin/flavodoxin oxidoreductase. (1188 aa)
RGE_03800Iron-containing alcohol dehydrogenase. (438 aa)
RGE_03880Phosphate acetyl/butyryl transferase family protein. (468 aa)
ackA-2Acetate kinase AckA; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (393 aa)
maeBMalate dehydrogenase MaeB. (775 aa)
pflBFormate acetyltransferase PflB. (751 aa)
pflAPyruvate formate-lyase activating enzyme PflA; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family. (252 aa)
RGE_06500Hypothetical protein. (95 aa)
gltBNAD(P)H-dependent glutamate synthase large subunit GltB. (1578 aa)
gltDNAD(P)H-dependent glutamate synthase small subunit GltD. (488 aa)
leuA2-isopropylmalate synthase LeuA; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. (558 aa)
ackA-3Acetate kinase AckA; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (407 aa)
ptaPhosphate acetyltransferase Pta; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. (686 aa)
ldhL-lactate dehydrogenase Ldh; Belongs to the LDH/MDH superfamily. (308 aa)
RGE_11660acetyl-CoA hydrolase. (504 aa)
acnBAconitate hydrase 2 AcnB; Belongs to the aconitase/IPM isomerase family. (863 aa)
mdhMalate dehydrogenase Mdh; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family. (328 aa)
sdhCSuccinate dehydrogenase cytochrome b556 subunit SdhC. (140 aa)
sdhDSuccinate dehydrogenase hydrophobic membrane anchor subunit SdhD. (120 aa)
sdhASuccinate dehydrogenase flavoprotein subunit SdhA; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (597 aa)
sdhBSuccinate dehydrogenase iron-sulfur subunit SdhB; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (234 aa)
gltACitrate synthase GltA; Belongs to the citrate synthase family. (436 aa)
sucDsuccinyl-CoA ligase[ADP-forming] subunit alpha SucD; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (297 aa)
sucCsuccinyl-CoA ligase[ADP-forming] subunit bata SucC; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (386 aa)
accACarboxyl transferase. (510 aa)
RGE_12410Biotin carboxylase. (676 aa)
leuC3-isopropylmalate dehydratase large LeuC; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (484 aa)
leuD3-isopropylmalate dehydratase small subunit LeuD; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (216 aa)
leuB3-isopropylmalate dehydrogenase LeuB; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. (363 aa)
pflB-2Formate acetyltransferase PflB. (748 aa)
pflA-2Pyruvate formate-lyase activating enzyme PflA; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family. (272 aa)
ackA-4Acetate kinase AckA; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (420 aa)
ilvDDihydroxy-acid dehydratase IlvD; Belongs to the IlvD/Edd family. (619 aa)
aceEPyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (864 aa)
RGE_18620Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (508 aa)
acsA-2Acetyl-coenzyme A synthetase AcsA; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (660 aa)
RGE_20970Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein. (1665 aa)
ppdKPyruvate phosphate dikinase PpdK; Belongs to the PEP-utilizing enzyme family. (907 aa)
pycPyruvate carboxylase Pyc; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1162 aa)
frdDFumarate reductase subunit D FrdD; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane; Belongs to the FrdD family. (118 aa)
frdCFumarate reductase subunit C FrdC. (131 aa)
frdBFumarate reductase iron-sulfur subunit FrdB. (259 aa)
frdAFumarate reductase flavoprotein subunit FrdA. (589 aa)
RGE_22610Putative pyruvate kinase. (619 aa)
RGE_23040Alcohol dehydrogenase. (349 aa)
aceE-2Pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (900 aa)
aceFDihydrolipoamide acetyltransferase AceF; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (563 aa)
lpdADihydrolipoamide dehydrogenase LpdA; Protein synonym:pyruvate dehydrogenase E3 component. (581 aa)
xscSulfoacetaldehyde acetyltransferase Xsc; Belongs to the TPP enzyme family. (570 aa)
RGE_25310Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (442 aa)
ldh-2L-lactate dehydrogenase Ldh; Catalyzes the conversion of lactate to pyruvate. (303 aa)
RGE_26220Beta-alanine-pyruvate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (435 aa)
ppsAPhosphoenolpyruvate synthase PpsA; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. (798 aa)
RGE_27230Putative phosphotransferase; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation. (274 aa)
odhL2-oxoglutarate dehydrogenase E3 component OdhL. (472 aa)
odhB2-oxoglutarate dehydrogenase E2 component OdhB; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (420 aa)
odhA2-oxoglutarate dehydrogenase E1 component OdhA. (952 aa)
leuA-22-isopropylmalate synthase,LeuA; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (513 aa)
ilvCKetol-acid reductoisomerase IlvC; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. (338 aa)
ilvHProtein synonym:acetohydroxy-acid synthase small subunit. (163 aa)
ilvIProtein synonym:acetolactate synthase I/II/III large subunit. (590 aa)
fumCFumarate hydratase class II FumC; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (465 aa)
porCPyruvate ferredoxin oxidoreductase gamma subunit PorC. (193 aa)
porAPyruvate ferredoxin oxidoreductase alpha subunit PorA. (417 aa)
porBPyruvate ferredoxin oxidoreductase beta subunit PorB. (302 aa)
porDPutative pyruvate ferredoxin oxidoreductase delta subunit PorD. (541 aa)
RGE_29810Citrate synthase family protein. (259 aa)
RGE_30830Aspartate aminotransferase. (408 aa)
icdIsocitrate dehydrogenase [NADP] Icd. (418 aa)
RGE_32390Protein synonym:acetohydroxy-acid synthase large subunit; Belongs to the TPP enzyme family. (566 aa)
RGE_32600Aminotransferase. (410 aa)
prpEpropionate--CoA ligase PrpE. (633 aa)
RGE_32660Alcohol dehydrogenase, zinc-binding. (330 aa)
RGE_35280Phosphate acetyl/butyryl transferase family protein. (466 aa)
dldD-lactate dehydrogenase Dld; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family. (581 aa)
lldDL-lactate dehydrogenase cytochrome LldD; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain; Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family. (379 aa)
RGE_35630NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (506 aa)
lldAL-lactate dehydrogenase LldA. (384 aa)
RGE_37010Protein synonym:acetohydroxy-acid synthase large subunit; Belongs to the TPP enzyme family. (584 aa)
acnAAconitate hydrase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (909 aa)
adhBIron-containing alcohol dehydrogenase AdhB. (383 aa)
yeaUTartrate dehydrogenase YeaU. (359 aa)
nifVHomocitrate synthase NifV; Belongs to the alpha-IPM synthase/homocitrate synthase family. (386 aa)
maeB-2Malate dehydrogenase MaeB. (764 aa)
sucD-2succinyl-CoA ligase[ADP-forming] subunit alpha SucD; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (297 aa)
sucC-2succinyl-CoA ligase[ADP-forming] subunit bata SucC; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (386 aa)
Your Current Organism:
Rubrivivax gelatinosus
NCBI taxonomy Id: 983917
Other names: R. gelatinosus IL144, Rubrivivax gelatinosus IL144, Rubrivivax gelatinosus str. IL144, Rubrivivax gelatinosus strain IL144
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