STRINGSTRING
RGE_39890 RGE_39890 RGE_39840 RGE_39840 ribBA ribBA ubiD ubiD menB menB ppc ppc cbbL cbbL cbbS cbbS cbbA-2 cbbA-2 thiC thiC gabT gabT coaBC coaBC eda eda moaA moaA rraA rraA cobD cobD RGE_28290 RGE_28290 aceA aceA ribB ribB citF citF citE citE tnaA tnaA RGE_17900 RGE_17900 cbiB cbiB cbbA cbbA pckG pckG RGE_01530 RGE_01530 hemE hemE trpE trpE trpC trpC RGE_12230 RGE_12230 lysA lysA RGE_05250 RGE_05250 RGE_05210 RGE_05210 folB folB purK purK RGE_11320 RGE_11320 pyrF pyrF deoC deoC RGE_43400 RGE_43400 psd psd folB-2 folB-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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RGE_39890Phenolic acid decarboxylase. (168 aa)
RGE_398402-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline decarboxylase/L-carbamoylase; Bifunctional protein. (590 aa)
ribBA3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. (365 aa)
ubiD3-polyprenyl-4-hydroxybenzoate decarboxylase UbiD; Belongs to the UbiD family. (517 aa)
menBNaphthoate synthase MenB; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA). (280 aa)
ppcPhosphoenolpyruvate carboxylase Ppc; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. (943 aa)
cbbLRibulose-1,5-bisphosphate carboxylase/oxygenase large subunit CbbL; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (493 aa)
cbbSRibulose-1,5-bisphosphate carboxylase/oxygenase small subunit CbbS. (144 aa)
cbbA-2Fructose-bisphosphate aldolase CbbA; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. (337 aa)
thiCThiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. (636 aa)
gabT4-aminobutyrate aminotransferase GabT; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (430 aa)
coaBCPhosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase CoaB/CoaC; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (408 aa)
eda2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase Eda; Bifunctional protein. (210 aa)
moaAMolybdenum cofactor biosynthesis protein A MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. (372 aa)
rraARegulator of ribonuclease activity A RraA; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions. (164 aa)
cobDPutative cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. (306 aa)
RGE_28290Orn/lys/arg decarboxylase. (754 aa)
aceAIsocitrate lyase aceA. (431 aa)
ribB3,4-dihydroxy-2-butanone 4-phosphate synthase RibB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. (220 aa)
citFCitrate lyase alpha subunit CitF. (506 aa)
citECitrate lyase beta subunit CitE; Belongs to the HpcH/HpaI aldolase family. (290 aa)
tnaATryptophanase TnaA; Belongs to the beta-eliminating lyase family. (456 aa)
RGE_17900Hypothetical protein. (411 aa)
cbiBCobalamin biosynthesis protein CbiB; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. (329 aa)
cbbAFructose-bisphosphate aldolase CbbA; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. (354 aa)
pckGPhosphoenolpyruvate carboxykinase [GTP] PckG; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family. (622 aa)
RGE_01530Amidohydrolase family protein. (338 aa)
hemEUroporphyrinogen decarboxylase HemE; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. (365 aa)
trpEAnthranilate synthase component I TrpE; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high con [...] (491 aa)
trpCIndole-3-glycerol phosphate synthase TrpC; Protein synonym:IGPS; Belongs to the TrpC family. (262 aa)
RGE_12230Putative lyase; Belongs to the HpcH/HpaI aldolase family. (337 aa)
lysADiaminopimelate decarboxylase LysA; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (424 aa)
RGE_05250Putative dihydrodipicolinate synthase; Belongs to the DapA family. (309 aa)
RGE_05210Hypothetical protein. (263 aa)
folBDihydroneopterin aldolase, putative FolB. (130 aa)
purK5-(carboxyamino)imidazole ribonucleotide synthase PurK; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR). (386 aa)
RGE_11320Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (438 aa)
pyrFOrotidine 5'-phosphate decarboxylase PyrF; Belongs to the OMP decarboxylase family. Type 2 subfamily. (273 aa)
deoCDeoxyribose-phosphate aldolase DeoC; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate. (246 aa)
RGE_43400Putative hydroxymethylglutaryl-CoA lyase. (305 aa)
psdPhosphatidylserine decarboxylase proenzyme Psd; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). (283 aa)
folB-2Dihydroneopterin aldolase, putative FolB. (156 aa)
Your Current Organism:
Rubrivivax gelatinosus
NCBI taxonomy Id: 983917
Other names: R. gelatinosus IL144, Rubrivivax gelatinosus IL144, Rubrivivax gelatinosus str. IL144, Rubrivivax gelatinosus strain IL144
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