STRINGSTRING
wecC wecC RGE_04160 RGE_04160 wecB wecB RGE_04100 RGE_04100 RGE_04090 RGE_04090 capD capD rmlA rmlA RGE_41390 RGE_41390 RGE_41350 RGE_41350 RGE_41270 RGE_41270 wecA wecA RGE_39150 RGE_39150 waaA waaA RGE_33120 RGE_33120 RGE_32290 RGE_32290 kdsB kdsB RGE_31780 RGE_31780 RGE_31750 RGE_31750 glgB-2 glgB-2 glgC glgC glgA glgA RGE_28360 RGE_28360 RGE_24930 RGE_24930 RGE_24890 RGE_24890 RGE_24870 RGE_24870 RGE_24840 RGE_24840 RGE_24800 RGE_24800 mdoG mdoG mdoH mdoH RGE_23080 RGE_23080 RGE_19900 RGE_19900 nosD nosD glgB glgB kdsC kdsC RGE_44860 RGE_44860 RGE_44850 RGE_44850 RGE_41520 RGE_41520 RGE_41510 RGE_41510 RGE_17250 RGE_17250 glf glf RGE_16990 RGE_16990 ptpA ptpA kdsA kdsA RGE_13820 RGE_13820 RGE_13790 RGE_13790 waaG waaG RGE_13770 RGE_13770 RGE_12110 RGE_12110 RGE_10840 RGE_10840 RGE_10830 RGE_10830 RGE_10810 RGE_10810 RGE_10800 RGE_10800 RGE_10750 RGE_10750 RGE_10720 RGE_10720 RGE_10710 RGE_10710 RGE_04430 RGE_04430 exoT exoT RGE_04360 RGE_04360 RGE_04280 RGE_04280 RGE_04220 RGE_04220 RGE_04210 RGE_04210 RGE_04190 RGE_04190
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
wecCUDP-N-acetyl-D-mannosamine dehydrogenase WecC; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (426 aa)
RGE_04160Glycosyl transferase, group 1. (403 aa)
wecBUDP-N-acetylglucosamine 2-epimerase WecB; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (373 aa)
RGE_04100Protein-tyrosine kinase. (315 aa)
RGE_04090Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. (528 aa)
capDPolysaccharide biosynthesis protein CapD. (626 aa)
rmlAGlucose-1-phosphate thymidylyltransferase RmlA; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (293 aa)
RGE_41390Hypothetical protein. (371 aa)
RGE_41350Glycosyl transferase, group 1. (404 aa)
RGE_41270Polysaccharide biosynthesis family protein. (437 aa)
wecAUndecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase WecA. (365 aa)
RGE_39150Phosphoethanolamine transferase. (547 aa)
waaA3-deoxy-D-manno-octulosonic-acid transferase WaaA; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. (438 aa)
RGE_33120Putative membrane protein. (566 aa)
RGE_32290Glycosyl transferase, group 1. (347 aa)
kdsB3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) KdsB; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. (247 aa)
RGE_31780Putative glycosyl transferase. (488 aa)
RGE_31750Glycosyl transferase family 2. (345 aa)
glgB-21,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (723 aa)
glgCGlucose-1-phosphate adenylyltransferase GlgC; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (421 aa)
glgAGlycogen synthase GlgA; Synthesizes alpha-1,4-glucan chains using ADP-glucose. (490 aa)
RGE_28360Glycosyl transferase, group 1. (356 aa)
RGE_24930Glycosyl transferase, group 1. (385 aa)
RGE_24890Glycosyl transferase, group 1. (424 aa)
RGE_24870Glycosyl transferase family 9. (371 aa)
RGE_24840Glycosyl transferase family 9. (347 aa)
RGE_24800Glycosyl transferase, group 1. (381 aa)
mdoGPeriplasmic glucan biosynthesis protein MdoG; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (506 aa)
mdoHGlucosyltransferase MdoH. (737 aa)
RGE_23080Putative transferase. (553 aa)
RGE_19900Flagellar hook associated protein LafW. (351 aa)
nosDCopper-binding periplasmic protein NosD. (416 aa)
glgBPutative 1,4-alpha-glucan-branching enzyme GlgB; Protein synonym:putative 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; protein synonym:putative glycogen-branching enzyme BE. (602 aa)
kdsC3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC. (189 aa)
RGE_44860Glycosyl transferase family 2. (330 aa)
RGE_44850Hypothetical protein. (489 aa)
RGE_41520Glycosyl transferase, group 1. (354 aa)
RGE_41510Glycosyl transferase, group 1. (403 aa)
RGE_17250Putative membrane protein. (497 aa)
glfUDP-galactopyranose mutase Glf. (371 aa)
RGE_16990Hypothetical protein. (905 aa)
ptpAPutative protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (163 aa)
kdsA2-dehydro-3-deoxyphosphooctonate aldolase KdsA; Protein synonym:3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase; protein synonym:KDO 8-P synthase; protein synonym:KDO-8-phosphate synthetase; protein synonym:KDOPS; protein synonym:phospho-2-dehydro-3-deoxyoctonate aldolase; Belongs to the KdsA family. (285 aa)
RGE_13820Lipopolysaccharide heptosyltransferase. (368 aa)
RGE_13790Putative LicD-family phosphotransferase. (198 aa)
waaGGlycosyl transferase, group 1. (362 aa)
RGE_13770Glycosyl transferase family 9. (340 aa)
RGE_12110Glycosyl transferase family 2. (315 aa)
RGE_10840Glycosyl transferase, group 1. (393 aa)
RGE_10830UDP-N-acetyl-D-mannosaminuronic acid transferase; Belongs to the glycosyltransferase 26 family. (246 aa)
RGE_10810Glycosyl transferase, group 1. (379 aa)
RGE_10800Glycosyl transferase, group 1. (349 aa)
RGE_10750Polysaccharide biosynthesis family protein. (479 aa)
RGE_10720Putative tyrosine-protein kinase. (307 aa)
RGE_10710Lipopolysaccharide biosynthesis protein. (475 aa)
RGE_04430Acyltransferase 3. (665 aa)
exoTPolysaccharide biosynthesis protein ExoT. (485 aa)
RGE_04360Glycosyl transferase, group 1. (436 aa)
RGE_04280Glycosyl transferase, group 1. (781 aa)
RGE_04220Glycosyl transferase, group 1. (410 aa)
RGE_04210Glycosyl transferase, group 1. (404 aa)
RGE_04190Glycosyl transferase, group 1. (393 aa)
Your Current Organism:
Rubrivivax gelatinosus
NCBI taxonomy Id: 983917
Other names: R. gelatinosus IL144, Rubrivivax gelatinosus IL144, Rubrivivax gelatinosus str. IL144, Rubrivivax gelatinosus strain IL144
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