STRINGSTRING
RGE_01380 RGE_01380 pufC pufC puhA puhA bchL bchL gntK gntK clpS clpS phnW phnW RGE_30160 RGE_30160 cbiX cbiX holC holC pucA pucA pucB pucB hrpA hrpA nifH nifH RGE_24810 RGE_24810 selO selO RGE_24080 RGE_24080 kaiC kaiC RGE_23250 RGE_23250 RGE_22640 RGE_22640 RGE_22460 RGE_22460 RGE_21430 RGE_21430 RGE_21340 RGE_21340 mtnD mtnD RGE_20500 RGE_20500 RGE_20220 RGE_20220 RGE_20120 RGE_20120 RGE_18830 RGE_18830 RGE_17790 RGE_17790 RGE_16000 RGE_16000 RGE_15320 RGE_15320 miaA miaA RGE_14220 RGE_14220 RGE_14040 RGE_14040 RGE_13180 RGE_13180 RGE_11710 RGE_11710 RGE_11060 RGE_11060 RGE_10730 RGE_10730 RGE_09770 RGE_09770 RGE_08950 RGE_08950 RGE_08850 RGE_08850 RGE_08760 RGE_08760 ispE ispE RGE_07240 RGE_07240 RGE_04860 RGE_04860 RGE_04170 RGE_04170 RGE_01790 RGE_01790 RGE_46840 RGE_46840 RGE_44730 RGE_44730 RGE_43370 RGE_43370 fixX fixX nifH-2 nifH-2 draG draG ubiX ubiX hemA hemA phr phr RGE_41710 RGE_41710 RGE_41590 RGE_41590 RGE_40210 RGE_40210 RGE_39840 RGE_39840 kaiC-2 kaiC-2 nadD nadD RGE_34800 RGE_34800 pufB pufB pufA pufA pufL pufL pufM pufM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RGE_01380Hypothetical protein. (443 aa)
pufCPhotosynthesis reaction center complex, subunit C PufC; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor. (366 aa)
puhAH subunit of photosynthetic reaction center PuhA. (253 aa)
bchLLight-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. (302 aa)
gntKGluconokinase GntK. (169 aa)
clpSATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. (119 aa)
phnW2-aminoethylphosphonate-pyruvate transaminase PhnW; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily. (372 aa)
RGE_30160Putative lyase. (131 aa)
cbiXCobalamin (Vitamin B12) biosynthesis CbiX protein; Protein synonym:sirohydrochlorin cobaltochelatase. (123 aa)
holCPutative DNA polymerase III chi subunit HolC. (144 aa)
pucALight-harvesting protein B-800/850 alpha chain PucA. (49 aa)
pucBLight-harvesting protein B-800/850 beta chain PucB; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (51 aa)
hrpAATP-dependent RNA helicase HrpA. (1315 aa)
nifHNitrogenase iron protein NifH; Belongs to the NifH/BchL/ChlL family. (289 aa)
RGE_24810Putative DNA topoisomerase, type I. (356 aa)
selOHypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family. (497 aa)
RGE_24080SET domain protein. (146 aa)
kaiCPutative circadian clock protein, KaiC. (514 aa)
RGE_23250Putative lyase. (155 aa)
RGE_22640Hypothetical protein. (171 aa)
RGE_22460Putative lyase. (136 aa)
RGE_21430Thioredoxin domain protein. (123 aa)
RGE_21340Putative lyase. (171 aa)
mtnDPutative acireductone dioxygenase (Ni2+ or Fe2+-requiring) MtnD; Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway. (184 aa)
RGE_20500Hypothetical protein. (207 aa)
RGE_20220Putative lyase. (149 aa)
RGE_20120Transcriptional regulator, Xre family. (90 aa)
RGE_18830NADP oxidoreductase, coenzyme F420-dependent. (210 aa)
RGE_17790Hypothetical protein. (189 aa)
RGE_16000Putative electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. (558 aa)
RGE_15320Hypothetical protein. (154 aa)
miaAtRNA dimethylallyltransferase MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (309 aa)
RGE_14220Hypothetical protein. (155 aa)
RGE_14040Putative riboflavin kinase/FMN adenylyltransferase; Bifunctional protein; Belongs to the ribF family. (320 aa)
RGE_13180Putative RNA modifying enzyme. (451 aa)
RGE_11710Aminotransferase. (377 aa)
RGE_11060Hypothetical protein. (337 aa)
RGE_10730Exosortase, EpsH, 8 transmembrane. (294 aa)
RGE_09770Hypothetical protein. (242 aa)
RGE_08950Putative lyase. (133 aa)
RGE_08850Putative ATPase; Belongs to the peptidase S24 family. (801 aa)
RGE_08760Hypothetical protein. (672 aa)
ispE4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (293 aa)
RGE_07240Hypothetical protein. (343 aa)
RGE_04860Methyltransferase type 12. (361 aa)
RGE_04170Eight transmembrane protein EpsH. (517 aa)
RGE_01790Putative adenylate cyclase. (172 aa)
RGE_46840SET domain protein. (156 aa)
RGE_44730SET domain protein. (162 aa)
RGE_43370Thioredoxin domain protein, DsbA family. (189 aa)
fixXElectron transfer flavoprotein ubiquinone oxidoreductase (ETF-QO) subunit FixX; Could be a 3Fe-4S cluster-containing protein. (99 aa)
nifH-2Nitrogenase iron protein NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (293 aa)
draGADP-ribosyl-[dinitrogen reductase] glycohydrolase DraG; Protein synonym:ADP-ribosylglycohydrolase; protein synonym:dinitrogenase reductase-activating glycohydrolase. (312 aa)
ubiX3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (188 aa)
hemAglutamyl-tRNA reductase HemA; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (431 aa)
phrDeoxyribodipyrimidine photo-lyase Phr; Belongs to the DNA photolyase family. (501 aa)
RGE_41710MOSC domain containing protein. (283 aa)
RGE_41590Pyridoxamine 5'-phosphate oxidase-related, FMN-binding. (181 aa)
RGE_40210Transcriptional coactivator/pterin dehydratase. (129 aa)
RGE_398402-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline decarboxylase/L-carbamoylase; Bifunctional protein. (590 aa)
kaiC-2Putative circadian clock protein, KaiC superfamily ATPase. (566 aa)
nadDNicotinate-nucleotide adenylyltransferase NadD; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (206 aa)
RGE_34800Methyltransferase type 12. (182 aa)
pufBBeta subunit of light-harvesting 1 (B870) complex PufB; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (48 aa)
pufAAlpha subunit of light-harvesting 1 (B870) complex PufA; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (67 aa)
pufLPhotosynthesis reaction center complex, L subunit PufL; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. (279 aa)
pufMPhotosynthesis reaction center complex, M subunit PufM; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. (325 aa)
Your Current Organism:
Rubrivivax gelatinosus
NCBI taxonomy Id: 983917
Other names: R. gelatinosus IL144, Rubrivivax gelatinosus IL144, Rubrivivax gelatinosus str. IL144, Rubrivivax gelatinosus strain IL144
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