Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RGE_12190 | RGE_32390 | RGE_12190 | RGE_32390 | Putative aminotransferase. | Protein synonym:acetohydroxy-acid synthase large subunit; Belongs to the TPP enzyme family. | 0.563 |
| RGE_12190 | RGE_32600 | RGE_12190 | RGE_32600 | Putative aminotransferase. | Aminotransferase. | 0.908 |
| RGE_12190 | RGE_37010 | RGE_12190 | RGE_37010 | Putative aminotransferase. | Protein synonym:acetohydroxy-acid synthase large subunit; Belongs to the TPP enzyme family. | 0.563 |
| RGE_12190 | asd | RGE_12190 | RGE_12500 | Putative aminotransferase. | Aspartate-semialdehyde dehydrogenase Asd; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.480 |
| RGE_12190 | ilvC | RGE_12190 | RGE_28050 | Putative aminotransferase. | Ketol-acid reductoisomerase IlvC; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.570 |
| RGE_12190 | ilvD | RGE_12190 | RGE_17640 | Putative aminotransferase. | Dihydroxy-acid dehydratase IlvD; Belongs to the IlvD/Edd family. | 0.984 |
| RGE_12190 | ilvE | RGE_12190 | RGE_01640 | Putative aminotransferase. | Branched-chain amino acid aminotransferase IlvE; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.917 |
| RGE_12190 | ilvH | RGE_12190 | RGE_28060 | Putative aminotransferase. | Protein synonym:acetohydroxy-acid synthase small subunit. | 0.593 |
| RGE_12190 | ilvI | RGE_12190 | RGE_28070 | Putative aminotransferase. | Protein synonym:acetolactate synthase I/II/III large subunit. | 0.563 |
| RGE_12190 | leuA | RGE_12190 | RGE_09780 | Putative aminotransferase. | 2-isopropylmalate synthase LeuA; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.972 |
| RGE_12190 | leuA-2 | RGE_12190 | RGE_28030 | Putative aminotransferase. | 2-isopropylmalate synthase,LeuA; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. | 0.972 |
| RGE_12190 | leuC | RGE_12190 | RGE_12460 | Putative aminotransferase. | 3-isopropylmalate dehydratase large LeuC; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.578 |
| RGE_12990 | RGE_30830 | RGE_12990 | RGE_30830 | Putative N-acetyltransferase. | Aspartate aminotransferase. | 0.909 |
| RGE_12990 | RGE_32600 | RGE_12990 | RGE_32600 | Putative N-acetyltransferase. | Aminotransferase. | 0.909 |
| RGE_12990 | argA | RGE_12990 | RGE_26990 | Putative N-acetyltransferase. | Amino-acid acetyltransferase ArgA; Belongs to the acetyltransferase family. ArgA subfamily. | 0.901 |
| RGE_12990 | argB | RGE_12990 | RGE_10290 | Putative N-acetyltransferase. | Acetylglutamate kinase ArgB; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.900 |
| RGE_12990 | argJ | RGE_12990 | RGE_10570 | Putative N-acetyltransferase. | Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.900 |
| RGE_29810 | RGE_30830 | RGE_29810 | RGE_30830 | Citrate synthase family protein. | Aspartate aminotransferase. | 0.881 |
| RGE_29810 | RGE_32600 | RGE_29810 | RGE_32600 | Citrate synthase family protein. | Aminotransferase. | 0.432 |
| RGE_29810 | acnA | RGE_29810 | RGE_38310 | Citrate synthase family protein. | Aconitate hydrase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.994 |
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