(7 nodes) Nuclear inner membrane, and Maintenance of rDNA network (Drechmeria coniospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DCS_08162	Uncharacterized protein. (742 aa)
	DCS_03875	Uncharacterized protein. (692 aa)
	DCS_00223	HTH APSES-type domain-containing protein. (423 aa)
	DCS_00356	Uncharacterized protein. (216 aa)
	DCS_00677	Uncharacterized protein. (455 aa)
	DCS_01269	Uncharacterized protein. (277 aa)
	DCS_02495	SUN domain-containing protein. (1023 aa)

Your Current Organism:

Drechmeria coniospora

NCBI taxonomy Id: 98403
Other names: CBS 615.82, D. coniospora, Meria coniospora

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCS_00223	DCS_01269	A0A151GPQ3	A0A151GSN7	HTH APSES-type domain-containing protein.	Uncharacterized protein.	0.762
DCS_00223	DCS_02495	A0A151GPQ3	A0A151GWC9	HTH APSES-type domain-containing protein.	SUN domain-containing protein.	0.890
DCS_00223	DCS_03875	A0A151GPQ3	A0A151GIG3	HTH APSES-type domain-containing protein.	Uncharacterized protein.	0.892
DCS_00356	DCS_00677	A0A151GQ52	A0A151GR10	Uncharacterized protein.	Uncharacterized protein.	0.468
DCS_00677	DCS_00356	A0A151GR10	A0A151GQ52	Uncharacterized protein.	Uncharacterized protein.	0.468
DCS_00677	DCS_01269	A0A151GR10	A0A151GSN7	Uncharacterized protein.	Uncharacterized protein.	0.486
DCS_00677	DCS_03875	A0A151GR10	A0A151GIG3	Uncharacterized protein.	Uncharacterized protein.	0.533
DCS_01269	DCS_00223	A0A151GSN7	A0A151GPQ3	Uncharacterized protein.	HTH APSES-type domain-containing protein.	0.762
DCS_01269	DCS_00677	A0A151GSN7	A0A151GR10	Uncharacterized protein.	Uncharacterized protein.	0.486
DCS_01269	DCS_02495	A0A151GSN7	A0A151GWC9	Uncharacterized protein.	SUN domain-containing protein.	0.604
DCS_01269	DCS_08162	A0A151GSN7	A0A151GGI1	Uncharacterized protein.	Uncharacterized protein.	0.444
DCS_02495	DCS_00223	A0A151GWC9	A0A151GPQ3	SUN domain-containing protein.	HTH APSES-type domain-containing protein.	0.890
DCS_02495	DCS_01269	A0A151GWC9	A0A151GSN7	SUN domain-containing protein.	Uncharacterized protein.	0.604
DCS_02495	DCS_03875	A0A151GWC9	A0A151GIG3	SUN domain-containing protein.	Uncharacterized protein.	0.827
DCS_02495	DCS_08162	A0A151GWC9	A0A151GGI1	SUN domain-containing protein.	Uncharacterized protein.	0.659
DCS_03875	DCS_00223	A0A151GIG3	A0A151GPQ3	Uncharacterized protein.	HTH APSES-type domain-containing protein.	0.892
DCS_03875	DCS_00677	A0A151GIG3	A0A151GR10	Uncharacterized protein.	Uncharacterized protein.	0.533
DCS_03875	DCS_02495	A0A151GIG3	A0A151GWC9	Uncharacterized protein.	SUN domain-containing protein.	0.827
DCS_03875	DCS_08162	A0A151GIG3	A0A151GGI1	Uncharacterized protein.	Uncharacterized protein.	0.492
DCS_08162	DCS_01269	A0A151GGI1	A0A151GSN7	Uncharacterized protein.	Uncharacterized protein.	0.444