(11 nodes) CD28 dependent Vav1 pathway, and Rho GTPase-activating protein domain network (Drechmeria coniospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DCS_06236	Uncharacterized protein. (1000 aa)
	DCS_07000	Non-specific serine/threonine protein kinase. (845 aa)
	DCS_07515	RhoGAP domain protein. (1760 aa)
	DCS_07805	Cell division control protein 42. (195 aa)
	DCS_04002	Non-specific serine/threonine protein kinase. (713 aa)
	DCS_04827	Protein kinase domain-containing protein. (552 aa)
	DCS_04775	Von Willebrand and RING finger domain containing protein. (1124 aa)
	DCS_00063	Uncharacterized protein. (209 aa)
	DCS_00207	Polarity protein BemA. (589 aa)
	DCS_00312	RhoGAP domain-containing protein. (1128 aa)
	DCS_01028	RhoGAP domain containing protein. (792 aa)

Your Current Organism:

Drechmeria coniospora

NCBI taxonomy Id: 98403
Other names: CBS 615.82, D. coniospora, Meria coniospora

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCS_00063	DCS_00207	A0A151GPB8	A0A151GPR9	Uncharacterized protein.	Polarity protein BemA.	0.693
DCS_00063	DCS_00312	A0A151GPB8	A0A151GQB1	Uncharacterized protein.	RhoGAP domain-containing protein.	0.998
DCS_00063	DCS_01028	A0A151GPB8	A0A151GS04	Uncharacterized protein.	RhoGAP domain containing protein.	0.843
DCS_00063	DCS_04002	A0A151GPB8	A0A151GIQ0	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.691
DCS_00063	DCS_04775	A0A151GPB8	A0A151GL80	Uncharacterized protein.	Von Willebrand and RING finger domain containing protein.	0.547
DCS_00063	DCS_04827	A0A151GPB8	A0A151GL30	Uncharacterized protein.	Protein kinase domain-containing protein.	0.691
DCS_00063	DCS_06236	A0A151GPB8	A0A151GAZ6	Uncharacterized protein.	Uncharacterized protein.	0.700
DCS_00063	DCS_07000	A0A151GPB8	A0A151GD61	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.691
DCS_00063	DCS_07515	A0A151GPB8	A0A151GEQ6	Uncharacterized protein.	RhoGAP domain protein.	0.695
DCS_00063	DCS_07805	A0A151GPB8	A0A151GFL7	Uncharacterized protein.	Cell division control protein 42.	0.724
DCS_00207	DCS_00063	A0A151GPR9	A0A151GPB8	Polarity protein BemA.	Uncharacterized protein.	0.693
DCS_00207	DCS_00312	A0A151GPR9	A0A151GQB1	Polarity protein BemA.	RhoGAP domain-containing protein.	0.803
DCS_00207	DCS_01028	A0A151GPR9	A0A151GS04	Polarity protein BemA.	RhoGAP domain containing protein.	0.466
DCS_00207	DCS_04002	A0A151GPR9	A0A151GIQ0	Polarity protein BemA.	Non-specific serine/threonine protein kinase.	0.958
DCS_00207	DCS_04775	A0A151GPR9	A0A151GL80	Polarity protein BemA.	Von Willebrand and RING finger domain containing protein.	0.837
DCS_00207	DCS_04827	A0A151GPR9	A0A151GL30	Polarity protein BemA.	Protein kinase domain-containing protein.	0.958
DCS_00207	DCS_06236	A0A151GPR9	A0A151GAZ6	Polarity protein BemA.	Uncharacterized protein.	0.998
DCS_00207	DCS_07000	A0A151GPR9	A0A151GD61	Polarity protein BemA.	Non-specific serine/threonine protein kinase.	0.973
DCS_00207	DCS_07515	A0A151GPR9	A0A151GEQ6	Polarity protein BemA.	RhoGAP domain protein.	0.624
DCS_00207	DCS_07805	A0A151GPR9	A0A151GFL7	Polarity protein BemA.	Cell division control protein 42.	0.992