(11 nodes) TRAPP complex network (Drechmeria coniospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DCS_06485	Cis-Golgi transport protein particle complex subunit. (775 aa)
	DCS_06926	Uncharacterized protein. (1316 aa)
	DCS_07466	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (238 aa)
	DCS_08058	Uncharacterized protein. (1639 aa)
	DCS_04287	Uncharacterized protein. (1106 aa)
	DCS_04846	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (156 aa)
	DCS_05164	Trafficking protein particle complex subunit BET3. (184 aa)
	DCS_01510	Uncharacterized protein. (192 aa)
	DCS_02789	Hypercellular protein HypA. (1380 aa)
	DCS_02925	Transport protein particle 20 kDa subunit. (163 aa)
	DCS_03029	Uncharacterized protein. (238 aa)

Your Current Organism:

Drechmeria coniospora

NCBI taxonomy Id: 98403
Other names: CBS 615.82, D. coniospora, Meria coniospora

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCS_01510	DCS_02789	A0A151GTI4	A0A151GX18	Uncharacterized protein.	Hypercellular protein HypA.	0.990
DCS_01510	DCS_02925	A0A151GTI4	A0A151GXI4	Uncharacterized protein.	Transport protein particle 20 kDa subunit.	0.992
DCS_01510	DCS_03029	A0A151GTI4	A0A151GXQ1	Uncharacterized protein.	Uncharacterized protein.	0.978
DCS_01510	DCS_04287	A0A151GTI4	A0A151GJJ8	Uncharacterized protein.	Uncharacterized protein.	0.995
DCS_01510	DCS_04846	A0A151GTI4	A0A151GL47	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.996
DCS_01510	DCS_05164	A0A151GTI4	A0A151GM99	Uncharacterized protein.	Trafficking protein particle complex subunit BET3.	0.998
DCS_01510	DCS_06485	A0A151GTI4	A0A151GBP7	Uncharacterized protein.	Cis-Golgi transport protein particle complex subunit.	0.987
DCS_01510	DCS_06926	A0A151GTI4	A0A151GD22	Uncharacterized protein.	Uncharacterized protein.	0.986
DCS_01510	DCS_07466	A0A151GTI4	A0A151GEJ9	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.993
DCS_01510	DCS_08058	A0A151GTI4	A0A151GG98	Uncharacterized protein.	Uncharacterized protein.	0.993
DCS_02789	DCS_01510	A0A151GX18	A0A151GTI4	Hypercellular protein HypA.	Uncharacterized protein.	0.990
DCS_02789	DCS_02925	A0A151GX18	A0A151GXI4	Hypercellular protein HypA.	Transport protein particle 20 kDa subunit.	0.993
DCS_02789	DCS_03029	A0A151GX18	A0A151GXQ1	Hypercellular protein HypA.	Uncharacterized protein.	0.976
DCS_02789	DCS_04287	A0A151GX18	A0A151GJJ8	Hypercellular protein HypA.	Uncharacterized protein.	0.992
DCS_02789	DCS_04846	A0A151GX18	A0A151GL47	Hypercellular protein HypA.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.991
DCS_02789	DCS_05164	A0A151GX18	A0A151GM99	Hypercellular protein HypA.	Trafficking protein particle complex subunit BET3.	0.991
DCS_02789	DCS_06485	A0A151GX18	A0A151GBP7	Hypercellular protein HypA.	Cis-Golgi transport protein particle complex subunit.	0.934
DCS_02789	DCS_06926	A0A151GX18	A0A151GD22	Hypercellular protein HypA.	Uncharacterized protein.	0.907
DCS_02789	DCS_07466	A0A151GX18	A0A151GEJ9	Hypercellular protein HypA.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.987
DCS_02789	DCS_08058	A0A151GX18	A0A151GG98	Hypercellular protein HypA.	Uncharacterized protein.	0.992