(24 nodes) Regulation of mitotic metaphase/anaphase transition network (Drechmeria coniospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DCS_02606	Anaphase control protein cut9. (750 aa)
	DCS_02306	Uncharacterized protein. (379 aa)
	DCS_01250	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (324 aa)
	DCS_06461	Checkpoint protein kinase. (1135 aa)
	DCS_06118	Chromosome segregation protein. (1632 aa)
	DCS_00892	Anaphase-promoting complex protein. (941 aa)
	DCS_00340	WD_REPEATS_REGION domain-containing protein. (243 aa)
	DCS_04982	Uncharacterized protein. (297 aa)
	DCS_04558	Uncharacterized protein. (73 aa)
	DCS_04442	Uncharacterized protein. (779 aa)
	DCS_04350	Mitotic spindle checkpoint component mad2. (260 aa)
	DCS_04274	Is centromere binding protein at prophase. (879 aa)
	DCS_03801	Asparaginase. (526 aa)
	DCS_03695	Protein phosphatase PP2A regulatory subunit A. (612 aa)
	DCS_07977	Cell cycle serine/threonine-protein kinase CDC5/MSD2. (1068 aa)
	DCS_07813	Uncharacterized protein. (787 aa)
	DCS_07454	Protein kinase domain-containing protein. (1000 aa)
	DCS_07461	TPR_REGION domain-containing protein. (374 aa)
	DCS_06575	Uncharacterized protein. (216 aa)
	DCS_06565	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (180 aa)
	DCS_02985	FHA domain containing protein. (559 aa)
	DCS_02923	Tetratricopeptide-like helical. (842 aa)
	DCS_02782	Cleft lip and palate transmembrane protein 1. (675 aa)
	DCS_02677	TPR_REGION domain-containing protein. (674 aa)

Your Current Organism:

Drechmeria coniospora

NCBI taxonomy Id: 98403
Other names: CBS 615.82, D. coniospora, Meria coniospora

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCS_00340	DCS_00892	A0A151GQ49	A0A151GRS2	WD_REPEATS_REGION domain-containing protein.	Anaphase-promoting complex protein.	0.937
DCS_00340	DCS_01250	A0A151GQ49	A0A151GSM2	WD_REPEATS_REGION domain-containing protein.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.662
DCS_00340	DCS_02606	A0A151GQ49	A0A151GWJ2	WD_REPEATS_REGION domain-containing protein.	Anaphase control protein cut9.	0.928
DCS_00340	DCS_02677	A0A151GQ49	A0A151GWP3	WD_REPEATS_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.945
DCS_00340	DCS_02923	A0A151GQ49	A0A151GXE5	WD_REPEATS_REGION domain-containing protein.	Tetratricopeptide-like helical.	0.990
DCS_00340	DCS_04274	A0A151GQ49	A0A151GJJ3	WD_REPEATS_REGION domain-containing protein.	Is centromere binding protein at prophase.	0.836
DCS_00340	DCS_04350	A0A151GQ49	A0A151GJX7	WD_REPEATS_REGION domain-containing protein.	Mitotic spindle checkpoint component mad2.	0.992
DCS_00340	DCS_04442	A0A151GQ49	A0A151GJY7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.928
DCS_00340	DCS_04982	A0A151GQ49	A0A151GLI9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.945
DCS_00340	DCS_06118	A0A151GQ49	A0A151GAQ7	WD_REPEATS_REGION domain-containing protein.	Chromosome segregation protein.	0.948
DCS_00340	DCS_06461	A0A151GQ49	A0A151GBS1	WD_REPEATS_REGION domain-containing protein.	Checkpoint protein kinase.	0.997
DCS_00340	DCS_06565	A0A151GQ49	A0A151GC32	WD_REPEATS_REGION domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.739
DCS_00340	DCS_06575	A0A151GQ49	A0A151GC45	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.847
DCS_00340	DCS_07454	A0A151GQ49	A0A151GEJ6	WD_REPEATS_REGION domain-containing protein.	Protein kinase domain-containing protein.	0.533
DCS_00340	DCS_07813	A0A151GQ49	A0A151GFH9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.980
DCS_00340	DCS_07977	A0A151GQ49	A0A151GG19	WD_REPEATS_REGION domain-containing protein.	Cell cycle serine/threonine-protein kinase CDC5/MSD2.	0.831
DCS_00892	DCS_00340	A0A151GRS2	A0A151GQ49	Anaphase-promoting complex protein.	WD_REPEATS_REGION domain-containing protein.	0.937
DCS_00892	DCS_02606	A0A151GRS2	A0A151GWJ2	Anaphase-promoting complex protein.	Anaphase control protein cut9.	0.998
DCS_00892	DCS_02677	A0A151GRS2	A0A151GWP3	Anaphase-promoting complex protein.	TPR_REGION domain-containing protein.	0.999
DCS_00892	DCS_02923	A0A151GRS2	A0A151GXE5	Anaphase-promoting complex protein.	Tetratricopeptide-like helical.	0.998