(38 nodes) Ribosome assembly network (Drechmeria coniospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DCS_03895	Ribosomal protein S19/S15; Belongs to the universal ribosomal protein uS19 family. (152 aa)
	DCS_06410	Brix domain-containing protein. (465 aa)
	DCS_03001	Protein synthesis factor, GTP-binding protein. (1065 aa)
	DCS_02982	Nucleic acid-binding, OB-fold-like protein. (1783 aa)
	DCS_02264	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (150 aa)
	DCS_02102	Uncharacterized protein. (313 aa)
	DCS_02098	WD_REPEATS_REGION domain-containing protein. (489 aa)
	DCS_03160	40S ribosomal protein S19. (151 aa)
	DCS_03159	Uncharacterized protein. (561 aa)
	DCS_03124	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (455 aa)
	DCS_03040	60S ribosomal protein L25. (157 aa)
	DCS_06454	Uncharacterized protein. (252 aa)
	DCS_06632	Putative MRD1. (848 aa)
	DCS_06759	Glycoprotein suaprga1. (308 aa)
	DCS_06899	Ribosomal_S7 domain-containing protein. (362 aa)
	DCS_07243	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (213 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (289 aa)
	DCS_07420	Brix domain-containing protein. (320 aa)
	DCS_07577	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (268 aa)
	DCS_01611	60S ribosomal protein L10-A-like protein. (221 aa)
	DCS_01280	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (247 aa)
	DCS_01225	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4943 aa)
	DCS_01026	Putative ribosomal protein S28B. (108 aa)
	DCS_05739	Ribosome biogenesis GTPase Lsg1. (647 aa)
	DCS_05245	60S acidic ribosomal protein P0. (390 aa)
	DCS_05313	UPF0023 family protein. (311 aa)
	DCS_05084	60S ribosomal protein L5. (307 aa)
	DCS_05049	Mitochondrial large ribosomal subunit; Belongs to the universal ribosomal protein uL22 family. (335 aa)
	DCS_04824	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (188 aa)
	DCS_06186	Brix domain-containing protein 2. (540 aa)
	DCS_03797	Periodic tryptophan protein 2. (888 aa)
	DCS_03681	Rsa3 domain-containing protein. (83 aa)
	DCS_03458	Uncharacterized protein. (165 aa)
	DCS_08221	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (102 aa)
	DCS_08047	Putative WD40-repeat protein. (564 aa)
	DCS_07901	Uncharacterized protein. (375 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (271 aa)
	DCS_07820	Eukaryotic translation initiation factor 5. (421 aa)

Your Current Organism:

Drechmeria coniospora

NCBI taxonomy Id: 98403
Other names: CBS 615.82, D. coniospora, Meria coniospora

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCS_01026	DCS_01280	A0A151GSA4	A0A151GSR4	Putative ribosomal protein S28B.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.942
DCS_01026	DCS_01611	A0A151GSA4	A0A151GTM4	Putative ribosomal protein S28B.	60S ribosomal protein L10-A-like protein.	0.995
DCS_01026	DCS_02102	A0A151GSA4	A0A151GVB1	Putative ribosomal protein S28B.	Uncharacterized protein.	0.946
DCS_01026	DCS_02264	A0A151GSA4	A0A151GVP9	Putative ribosomal protein S28B.	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.	0.999
DCS_01026	DCS_02982	A0A151GSA4	A0A151GXK9	Putative ribosomal protein S28B.	Nucleic acid-binding, OB-fold-like protein.	0.946
DCS_01026	DCS_03001	A0A151GSA4	A0A151GXN3	Putative ribosomal protein S28B.	Protein synthesis factor, GTP-binding protein.	0.833
DCS_01026	DCS_03040	A0A151GSA4	A0A151GXR3	Putative ribosomal protein S28B.	60S ribosomal protein L25.	0.997
DCS_01026	DCS_03159	A0A151GSA4	A0A151GY33	Putative ribosomal protein S28B.	Uncharacterized protein.	0.989
DCS_01026	DCS_03160	A0A151GSA4	A0A151GY46	Putative ribosomal protein S28B.	40S ribosomal protein S19.	0.989
DCS_01026	DCS_03797	A0A151GSA4	A0A151GIC0	Putative ribosomal protein S28B.	Periodic tryptophan protein 2.	0.946
DCS_01026	DCS_03895	A0A151GSA4	A0A151GII5	Putative ribosomal protein S28B.	Ribosomal protein S19/S15; Belongs to the universal ribosomal protein uS19 family.	0.999
DCS_01026	DCS_05049	A0A151GSA4	A0A151GLR3	Putative ribosomal protein S28B.	Mitochondrial large ribosomal subunit; Belongs to the universal ribosomal protein uL22 family.	0.940
DCS_01026	DCS_05084	A0A151GSA4	A0A151GM21	Putative ribosomal protein S28B.	60S ribosomal protein L5.	0.997
DCS_01026	DCS_05245	A0A151GSA4	A0A151GML1	Putative ribosomal protein S28B.	60S acidic ribosomal protein P0.	0.981
DCS_01026	DCS_05313	A0A151GSA4	A0A151GMH7	Putative ribosomal protein S28B.	UPF0023 family protein.	0.646
DCS_01026	DCS_06454	A0A151GSA4	A0A151GBJ9	Putative ribosomal protein S28B.	Uncharacterized protein.	0.978
DCS_01026	DCS_06899	A0A151GSA4	A0A151GCV5	Putative ribosomal protein S28B.	Ribosomal_S7 domain-containing protein.	0.978
DCS_01026	DCS_07243	A0A151GSA4	A0A151GDW1	Putative ribosomal protein S28B.	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.999
DCS_01026	DCS_07577	A0A151GSA4	A0A151GEU3	Putative ribosomal protein S28B.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.997
DCS_01026	DCS_07820	A0A151GSA4	A0A151GFI1	Putative ribosomal protein S28B.	Eukaryotic translation initiation factor 5.	0.913